miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 4126 0.69 0.236963
Target:  5'- gGCGCCCCCcagaggCCCgGGCggcugUCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGa-----GGGgCCG-----GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 135786 0.69 0.231592
Target:  5'- gGCGCCCgCCccCCCUGGUCCugGCCCg-- -3'
miRNA:   3'- aUGCGGG-GGa-GGGGCCGGG--CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 74270 0.69 0.231592
Target:  5'- cGCGCCgCCaUUCCCGcCCCGCCCc-- -3'
miRNA:   3'- aUGCGGgGG-AGGGGCcGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 28032 0.69 0.231061
Target:  5'- -cCGCCCCCUCUCCGcaucaccacagaaGCCCcGCCUa-- -3'
miRNA:   3'- auGCGGGGGAGGGGC-------------CGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 720 0.69 0.226324
Target:  5'- --gGCCccagCCCUCCCCGGCgCGUCCc-- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGgGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 147435 0.69 0.226324
Target:  5'- cGCGCCUCUUCCUCGGacgcaCCGCCg--- -3'
miRNA:   3'- aUGCGGGGGAGGGGCCg----GGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 9294 0.7 0.221158
Target:  5'- gACGUCCaCCUCgCCGGCggUCGCCCa-- -3'
miRNA:   3'- aUGCGGG-GGAGgGGCCG--GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 34831 0.7 0.221158
Target:  5'- cGCGgCCCCUCCCgGcaGCCaCGCCCc-- -3'
miRNA:   3'- aUGCgGGGGAGGGgC--CGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 53276 0.7 0.221158
Target:  5'- -cCGCCCCCgccguugagCCCCucGCCCGUCCUc- -3'
miRNA:   3'- auGCGGGGGa--------GGGGc-CGGGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 144341 0.7 0.221158
Target:  5'- --gGCCCCCcgCCCCGcGCCgGUCCa-- -3'
miRNA:   3'- augCGGGGGa-GGGGC-CGGgCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 109384 0.7 0.221158
Target:  5'- cGCGCCCCCcgaCCCCGccCCCGaCCCg-- -3'
miRNA:   3'- aUGCGGGGGa--GGGGCc-GGGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 143441 0.7 0.216093
Target:  5'- cGCGCUCCCaccCCCCGGgCCGUguCCUUg -3'
miRNA:   3'- aUGCGGGGGa--GGGGCCgGGCG--GGAAa -5'
5536 5' -67.2 NC_001806.1 + 23462 0.7 0.211127
Target:  5'- gGCGCCCCgggCCgCCgcggcgcaGGCCCGCCCg-- -3'
miRNA:   3'- aUGCGGGGga-GG-GG--------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1236 0.7 0.211127
Target:  5'- aGCGCCCCg-CCCCGuCCCGgCCCg-- -3'
miRNA:   3'- aUGCGGGGgaGGGGCcGGGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 80365 0.7 0.20626
Target:  5'- cGCGCCCCaaCCCCaGCCCcaGCCCc-- -3'
miRNA:   3'- aUGCGGGGgaGGGGcCGGG--CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 80202 0.7 0.20149
Target:  5'- -uCGCCCCg-CCCCcgacgucaGGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGgaGGGG--------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 22707 0.7 0.195893
Target:  5'- cGCGCCCgCCUCCCCcgcggggGGCgacgaccccgacgCCGCCCg-- -3'
miRNA:   3'- aUGCGGG-GGAGGGG-------CCG-------------GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 79409 0.71 0.187753
Target:  5'- cGCGCCCCUccuugCCCCGGaCCCccuuucGCCCa-- -3'
miRNA:   3'- aUGCGGGGGa----GGGGCC-GGG------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 120022 0.71 0.170724
Target:  5'- cUGCGCCaCCCgcgCCCCGuccugCCGCCCUUUg -3'
miRNA:   3'- -AUGCGG-GGGa--GGGGCcg---GGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 37577 0.71 0.170724
Target:  5'- gGCGUCaaagggCCCUCCuuGGCCCGCCa--- -3'
miRNA:   3'- aUGCGG------GGGAGGggCCGGGCGGgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.