miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 126487 0.68 0.295881
Target:  5'- cGCGCCCgggcgCgUCCCCGGCCCggaggagGCUCUc- -3'
miRNA:   3'- aUGCGGG-----GgAGGGGCCGGG-------CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 119254 0.68 0.290084
Target:  5'- cGCGUCCCCgcguccgcagCCCuUGGCCCgGCCCc-- -3'
miRNA:   3'- aUGCGGGGGa---------GGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 102964 0.68 0.290084
Target:  5'- gGCGCCCCCccgucgCCCCcaCCCGCCg--- -3'
miRNA:   3'- aUGCGGGGGa-----GGGGccGGGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 74357 0.68 0.283748
Target:  5'- gACGCCCCCgaggaCCUGGCggccuggcucuCCGUCCUg- -3'
miRNA:   3'- aUGCGGGGGag---GGGCCG-----------GGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 69875 0.68 0.283748
Target:  5'- cACGCCCCCUCuguccaCCUGGCCgcggCGaCCCa-- -3'
miRNA:   3'- aUGCGGGGGAG------GGGCCGG----GC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 293 0.68 0.283748
Target:  5'- ---cCCCCgCUCCCgCGGCCCcGCCCc-- -3'
miRNA:   3'- augcGGGG-GAGGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 29763 0.68 0.283748
Target:  5'- -cCGCCCCCcgccggacgCCCCGcGCCCcCCCa-- -3'
miRNA:   3'- auGCGGGGGa--------GGGGC-CGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 152003 0.68 0.283748
Target:  5'- ---cCCCCgCUCCCgCGGCCCcGCCCc-- -3'
miRNA:   3'- augcGGGG-GAGGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 21421 0.68 0.277521
Target:  5'- cGCGgCCUCgccgCCCCGGaccCCCGCCUUUc -3'
miRNA:   3'- aUGCgGGGGa---GGGGCC---GGGCGGGAAa -5'
5536 5' -67.2 NC_001806.1 + 20294 0.68 0.271404
Target:  5'- gGCGgCCCCgCCCCcuuggggcGGuCCCGCCCg-- -3'
miRNA:   3'- aUGCgGGGGaGGGG--------CC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 11118 0.68 0.265396
Target:  5'- cGgGCCCUCUCCCCGGCU--UCCUg- -3'
miRNA:   3'- aUgCGGGGGAGGGGCCGGgcGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 140161 0.69 0.253704
Target:  5'- cGCGCCUCCacCCCCGacaaccGCCUGCCCc-- -3'
miRNA:   3'- aUGCGGGGGa-GGGGC------CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23494 0.69 0.253704
Target:  5'- cGCGCCCCgUggccgugucgCgCCGGCCCGCCg--- -3'
miRNA:   3'- aUGCGGGGgA----------GgGGCCGGGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 5612 0.69 0.253704
Target:  5'- cGCGgCCCgUuggucgaacCCCCGGcCCCGCCCa-- -3'
miRNA:   3'- aUGCgGGGgA---------GGGGCC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23817 0.69 0.248018
Target:  5'- uUugGCCCCCUgcgcgCCUCgGGCCCGCUg--- -3'
miRNA:   3'- -AugCGGGGGA-----GGGG-CCGGGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 135003 0.69 0.248018
Target:  5'- gAUGCCCCCgCCCUGGUCCGgCg--- -3'
miRNA:   3'- aUGCGGGGGaGGGGCCGGGCgGgaaa -5'
5536 5' -67.2 NC_001806.1 + 112894 0.69 0.242438
Target:  5'- -cCGCCCCCggccaCCCGGaucCCCGCgCCUUc -3'
miRNA:   3'- auGCGGGGGag---GGGCC---GGGCG-GGAAa -5'
5536 5' -67.2 NC_001806.1 + 79607 0.69 0.242438
Target:  5'- gGCGCCCCCcgaugCCaCCGcccCCCGCCCc-- -3'
miRNA:   3'- aUGCGGGGGa----GG-GGCc--GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 92333 0.69 0.242438
Target:  5'- cUGCGCCCCCagCCUaaCGGCCgGCCa--- -3'
miRNA:   3'- -AUGCGGGGGa-GGG--GCCGGgCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 143529 0.69 0.236963
Target:  5'- -cCGCCCaCCcggCCCGGCCCGgCCCg-- -3'
miRNA:   3'- auGCGGG-GGag-GGGCCGGGC-GGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.