miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 144959 0.67 0.309757
Target:  5'- --gGCCCCCguggcggCCCGGCCCgggGCCCc-- -3'
miRNA:   3'- augCGGGGGag-----GGGCCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 152047 0.67 0.309757
Target:  5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3'
miRNA:   3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 77441 0.67 0.309757
Target:  5'- gACGCCCgCgCCCgGGCguCCGCCCc-- -3'
miRNA:   3'- aUGCGGGgGaGGGgCCG--GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 114535 0.67 0.309757
Target:  5'- cGCGCCCaauuuCC-CCCCGGCCCuGCgCg-- -3'
miRNA:   3'- aUGCGGG-----GGaGGGGCCGGG-CGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 1144 0.68 0.303088
Target:  5'- -cCGCCCCUcgCCCCcuCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGa-GGGGccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30115 0.68 0.303088
Target:  5'- aGCGaCUCCC-CCCCGGCCUcuccccacagGCCCc-- -3'
miRNA:   3'- aUGC-GGGGGaGGGGCCGGG----------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 112383 0.68 0.303088
Target:  5'- cACGCagCCCUCCgUGGCCgUGCCCc-- -3'
miRNA:   3'- aUGCGg-GGGAGGgGCCGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 68134 0.68 0.301109
Target:  5'- gAgGCCCCCgUcgucacgaccucacCCgCCGGUCCGCCCUc- -3'
miRNA:   3'- aUgCGGGGG-A--------------GG-GGCCGGGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 948 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 120803 0.68 0.296531
Target:  5'- gUugGCCCCCgCCUCuggGGUuuGCCCUc- -3'
miRNA:   3'- -AugCGGGGGaGGGG---CCGggCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 146652 0.68 0.296531
Target:  5'- gACGCCCCCugcUCCCCGGaCCacggguGCCg--- -3'
miRNA:   3'- aUGCGGGGG---AGGGGCC-GGg-----CGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 52830 0.68 0.296531
Target:  5'- -gUGCCCCCgcgccUCCCGGCCCGUa---- -3'
miRNA:   3'- auGCGGGGGa----GGGGCCGGGCGggaaa -5'
5536 5' -67.2 NC_001806.1 + 131506 0.68 0.296531
Target:  5'- gUugGCCCCCggaCCCGGgCCGuuuCCCa-- -3'
miRNA:   3'- -AugCGGGGGag-GGGCCgGGC---GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 846 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1117 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 880 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 914 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1083 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1015 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1049 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.