miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 337 0.67 0.309757
Target:  5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3'
miRNA:   3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 152047 0.67 0.309757
Target:  5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3'
miRNA:   3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 49130 0.67 0.309757
Target:  5'- cGCGCauccaCCCgcCCCCGcGCCuCGCCCg-- -3'
miRNA:   3'- aUGCGg----GGGa-GGGGC-CGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 114535 0.67 0.309757
Target:  5'- cGCGCCCaauuuCC-CCCCGGCCCuGCgCg-- -3'
miRNA:   3'- aUGCGGG-----GGaGGGGCCGGG-CGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 1083 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 880 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 52830 0.68 0.296531
Target:  5'- -gUGCCCCCgcgccUCCCGGCCCGUa---- -3'
miRNA:   3'- auGCGGGGGa----GGGGCCGGGCGggaaa -5'
5536 5' -67.2 NC_001806.1 + 74357 0.68 0.283748
Target:  5'- gACGCCCCCgaggaCCUGGCggccuggcucuCCGUCCUg- -3'
miRNA:   3'- aUGCGGGGGag---GGGCCG-----------GGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 948 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 11118 0.68 0.265396
Target:  5'- cGgGCCCUCUCCCCGGCU--UCCUg- -3'
miRNA:   3'- aUgCGGGGGAGGGGCCGGgcGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 1144 0.68 0.303088
Target:  5'- -cCGCCCCUcgCCCCcuCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGa-GGGGccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 152003 0.68 0.283748
Target:  5'- ---cCCCCgCUCCCgCGGCCCcGCCCc-- -3'
miRNA:   3'- augcGGGG-GAGGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30115 0.68 0.303088
Target:  5'- aGCGaCUCCC-CCCCGGCCUcuccccacagGCCCc-- -3'
miRNA:   3'- aUGC-GGGGGaGGGGCCGGG----------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 119254 0.68 0.290084
Target:  5'- cGCGUCCCCgcguccgcagCCCuUGGCCCgGCCCc-- -3'
miRNA:   3'- aUGCGGGGGa---------GGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 126487 0.68 0.295881
Target:  5'- cGCGCCCgggcgCgUCCCCGGCCCggaggagGCUCUc- -3'
miRNA:   3'- aUGCGGG-----GgAGGGGCCGGG-------CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 120803 0.68 0.296531
Target:  5'- gUugGCCCCCgCCUCuggGGUuuGCCCUc- -3'
miRNA:   3'- -AugCGGGGGaGGGG---CCGggCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 112383 0.68 0.303088
Target:  5'- cACGCagCCCUCCgUGGCCgUGCCCc-- -3'
miRNA:   3'- aUGCGg-GGGAGGgGCCGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 914 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 29763 0.68 0.283748
Target:  5'- -cCGCCCCCcgccggacgCCCCGcGCCCcCCCa-- -3'
miRNA:   3'- auGCGGGGGa--------GGGGC-CGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 68134 0.68 0.301109
Target:  5'- gAgGCCCCCgUcgucacgaccucacCCgCCGGUCCGCCCUc- -3'
miRNA:   3'- aUgCGGGGG-A--------------GG-GGCCGGGCGGGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.