miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 97806 0.66 0.352101
Target:  5'- cACGCCCCCgccgCCCgGGgCCaGCgCCa-- -3'
miRNA:   3'- aUGCGGGGGa---GGGgCCgGG-CG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 47193 0.66 0.382531
Target:  5'- -cCGCCCCCcCgCCCGGCCgGggguCCCa-- -3'
miRNA:   3'- auGCGGGGGaG-GGGCCGGgC----GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 24803 0.66 0.359546
Target:  5'- gGgGCCCUg-CCgCCGGCgCCGCCCg-- -3'
miRNA:   3'- aUgCGGGGgaGG-GGCCG-GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 52662 0.66 0.382531
Target:  5'- -cCGCCCCUcCCCCGaCCuCGCCUa-- -3'
miRNA:   3'- auGCGGGGGaGGGGCcGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 21494 0.66 0.359546
Target:  5'- gACGCCgCCggcgaccgggCCCCGGCCCGgggCCg-- -3'
miRNA:   3'- aUGCGGgGGa---------GGGGCCGGGCg--GGaaa -5'
5536 5' -67.2 NC_001806.1 + 137800 0.66 0.397586
Target:  5'- aACGCCCuguaccacaCC-CCCCaguacgcGGCCCGCCUg-- -3'
miRNA:   3'- aUGCGGG---------GGaGGGG-------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 87311 0.67 0.344767
Target:  5'- cGCGCCCUCcggCUCCcGCUCGCCCc-- -3'
miRNA:   3'- aUGCGGGGGa--GGGGcCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 49130 0.67 0.309757
Target:  5'- cGCGCauccaCCCgcCCCCGcGCCuCGCCCg-- -3'
miRNA:   3'- aUGCGg----GGGa-GGGGC-CGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 85442 0.67 0.344767
Target:  5'- gUACGUCaUCUUUCCCGGCacguCCGCCCa-- -3'
miRNA:   3'- -AUGCGG-GGGAGGGGCCG----GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 152047 0.67 0.309757
Target:  5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3'
miRNA:   3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 79206 0.67 0.323428
Target:  5'- cGCGCCCCCgacgaccagagccCCUCGGUCCcaaacccgacccccgGCCCUg- -3'
miRNA:   3'- aUGCGGGGGa------------GGGGCCGGG---------------CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 114535 0.67 0.309757
Target:  5'- cGCGCCCaauuuCC-CCCCGGCCCuGCgCg-- -3'
miRNA:   3'- aUGCGGG-----GGaGGGGCCGGG-CGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 128853 0.67 0.33043
Target:  5'- cACGCCgUCCgcgCCCCGGUCaUGCCUUUc -3'
miRNA:   3'- aUGCGG-GGGa--GGGGCCGG-GCGGGAAa -5'
5536 5' -67.2 NC_001806.1 + 48091 0.67 0.326215
Target:  5'- gACGaCCCCUCCCaCccugcauggcaaccaGGCCCGCgCCUc- -3'
miRNA:   3'- aUGCgGGGGAGGG-G---------------CCGGGCG-GGAaa -5'
5536 5' -67.2 NC_001806.1 + 77441 0.67 0.309757
Target:  5'- gACGCCCgCgCCCgGGCguCCGCCCc-- -3'
miRNA:   3'- aUGCGGGgGaGGGgCCG--GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 144959 0.67 0.309757
Target:  5'- --gGCCCCCguggcggCCCGGCCCgggGCCCc-- -3'
miRNA:   3'- augCGGGGGag-----GGGCCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 5523 0.67 0.337543
Target:  5'- --gGCCCCCcgcccCCCCGGCggGCCCa-- -3'
miRNA:   3'- augCGGGGGa----GGGGCCGggCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 145978 0.67 0.33043
Target:  5'- -cCGaCCCCCUuuugggcgCCCCGuCCCGCCCc-- -3'
miRNA:   3'- auGC-GGGGGA--------GGGGCcGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 129646 0.67 0.337543
Target:  5'- --aGCUCCUgcaggcugCCCUGcGCCCGCCCg-- -3'
miRNA:   3'- augCGGGGGa-------GGGGC-CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 33339 0.67 0.309757
Target:  5'- gACGCCCCUuggccgCCCCGGCUgcagggggGCCCg-- -3'
miRNA:   3'- aUGCGGGGGa-----GGGGCCGGg-------CGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.