Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5536 | 5' | -67.2 | NC_001806.1 | + | 120758 | 0.73 | 0.130823 |
Target: 5'- gGCGCCUUC-CCCCGGCCaccuCGCCCa-- -3' miRNA: 3'- aUGCGGGGGaGGGGCCGG----GCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 26399 | 0.73 | 0.127656 |
Target: 5'- cGCgGCCCCCgccgcCCCCGG-CCGCCCg-- -3' miRNA: 3'- aUG-CGGGGGa----GGGGCCgGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 82428 | 0.73 | 0.124561 |
Target: 5'- gGgGCCCgCCUCCCCGucCCCGCCCc-- -3' miRNA: 3'- aUgCGGG-GGAGGGGCc-GGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 78925 | 0.73 | 0.118578 |
Target: 5'- aGCGgCCCCUCgCCCggGGCCCGCCgUg- -3' miRNA: 3'- aUGCgGGGGAG-GGG--CCGGGCGGgAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 21834 | 0.72 | 0.162737 |
Target: 5'- cACcCCCCCUCUCCgaGGCCgCGCCCa-- -3' miRNA: 3'- aUGcGGGGGAGGGG--CCGG-GCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 74825 | 0.72 | 0.160408 |
Target: 5'- cUGCGCCCCCUCCCUgacuuugugGGCuaaaggccuguccggCCGUCCUg- -3' miRNA: 3'- -AUGCGGGGGAGGGG---------CCG---------------GGCGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 104805 | 0.72 | 0.158871 |
Target: 5'- cAUGCCCCgC-CCCCGGCCCucaCCCUc- -3' miRNA: 3'- aUGCGGGG-GaGGGGCCGGGc--GGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 132504 | 0.72 | 0.147767 |
Target: 5'- -cCGCCCCCggggCCCUGGCCCccgucuuuGCCUUUc -3' miRNA: 3'- auGCGGGGGa---GGGGCCGGG--------CGGGAAa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 982 | 0.72 | 0.147767 |
Target: 5'- -uCGCCCCCUCCCgccCCCGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgccGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 87417 | 0.72 | 0.147767 |
Target: 5'- gGCGCCUCCcCCCCGGCgC-CCCUa- -3' miRNA: 3'- aUGCGGGGGaGGGGCCGgGcGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 1530 | 0.72 | 0.144225 |
Target: 5'- gGCGCaaaagUCCCUCCgCGGCCCGCgCCa-- -3' miRNA: 3'- aUGCG-----GGGGAGGgGCCGGGCG-GGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 28923 | 0.72 | 0.140761 |
Target: 5'- -cCGCCCCCcuuuuuUCCCCuaGCCCGCCCc-- -3' miRNA: 3'- auGCGGGGG------AGGGGc-CGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 79409 | 0.71 | 0.187753 |
Target: 5'- cGCGCCCCUccuugCCCCGGaCCCccuuucGCCCa-- -3' miRNA: 3'- aUGCGGGGGa----GGGGCC-GGG------CGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 120022 | 0.71 | 0.170724 |
Target: 5'- cUGCGCCaCCCgcgCCCCGuccugCCGCCCUUUg -3' miRNA: 3'- -AUGCGG-GGGa--GGGGCcg---GGCGGGAAA- -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 37577 | 0.71 | 0.170724 |
Target: 5'- gGCGUCaaagggCCCUCCuuGGCCCGCCa--- -3' miRNA: 3'- aUGCGG------GGGAGGggCCGGGCGGgaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 30271 | 0.71 | 0.166688 |
Target: 5'- --gGCCCCCgcgCCCCGGCCC-CCg--- -3' miRNA: 3'- augCGGGGGa--GGGGCCGGGcGGgaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 80202 | 0.7 | 0.20149 |
Target: 5'- -uCGCCCCg-CCCCcgacgucaGGCCCGCCCc-- -3' miRNA: 3'- auGCGGGGgaGGGG--------CCGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 80365 | 0.7 | 0.20626 |
Target: 5'- cGCGCCCCaaCCCCaGCCCcaGCCCc-- -3' miRNA: 3'- aUGCGGGGgaGGGGcCGGG--CGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 1236 | 0.7 | 0.211127 |
Target: 5'- aGCGCCCCg-CCCCGuCCCGgCCCg-- -3' miRNA: 3'- aUGCGGGGgaGGGGCcGGGC-GGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 23462 | 0.7 | 0.211127 |
Target: 5'- gGCGCCCCgggCCgCCgcggcgcaGGCCCGCCCg-- -3' miRNA: 3'- aUGCGGGGga-GG-GG--------CCGGGCGGGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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