miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 21132 0.73 0.132109
Target:  5'- aGCGCCCCggCUCCCCgGGCCCcaccgacgggccgccGCCCa-- -3'
miRNA:   3'- aUGCGGGG--GAGGGG-CCGGG---------------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26745 0.73 0.134061
Target:  5'- cGCGCCCCUUCCgccuuccgCCGcGCCuCGCCCUc- -3'
miRNA:   3'- aUGCGGGGGAGG--------GGC-CGG-GCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 143960 0.73 0.137374
Target:  5'- cACGCCCCCgccccugCCCCGGCgacccCCGgCCCg-- -3'
miRNA:   3'- aUGCGGGGGa------GGGGCCG-----GGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30170 0.73 0.137374
Target:  5'- -cCGCCCCCcgCCCCgGGCCC-CCCg-- -3'
miRNA:   3'- auGCGGGGGa-GGGG-CCGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 28923 0.72 0.140761
Target:  5'- -cCGCCCCCcuuuuuUCCCCuaGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGG------AGGGGc-CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1530 0.72 0.144225
Target:  5'- gGCGCaaaagUCCCUCCgCGGCCCGCgCCa-- -3'
miRNA:   3'- aUGCG-----GGGGAGGgGCCGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 132504 0.72 0.147767
Target:  5'- -cCGCCCCCggggCCCUGGCCCccgucuuuGCCUUUc -3'
miRNA:   3'- auGCGGGGGa---GGGGCCGGG--------CGGGAAa -5'
5536 5' -67.2 NC_001806.1 + 982 0.72 0.147767
Target:  5'- -uCGCCCCCUCCCgccCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 87417 0.72 0.147767
Target:  5'- gGCGCCUCCcCCCCGGCgC-CCCUa- -3'
miRNA:   3'- aUGCGGGGGaGGGGCCGgGcGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 104805 0.72 0.158871
Target:  5'- cAUGCCCCgC-CCCCGGCCCucaCCCUc- -3'
miRNA:   3'- aUGCGGGG-GaGGGGCCGGGc--GGGAaa -5'
5536 5' -67.2 NC_001806.1 + 74825 0.72 0.160408
Target:  5'- cUGCGCCCCCUCCCUgacuuugugGGCuaaaggccuguccggCCGUCCUg- -3'
miRNA:   3'- -AUGCGGGGGAGGGG---------CCG---------------GGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 21834 0.72 0.162737
Target:  5'- cACcCCCCCUCUCCgaGGCCgCGCCCa-- -3'
miRNA:   3'- aUGcGGGGGAGGGG--CCGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30271 0.71 0.166688
Target:  5'- --gGCCCCCgcgCCCCGGCCC-CCg--- -3'
miRNA:   3'- augCGGGGGa--GGGGCCGGGcGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 37577 0.71 0.170724
Target:  5'- gGCGUCaaagggCCCUCCuuGGCCCGCCa--- -3'
miRNA:   3'- aUGCGG------GGGAGGggCCGGGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 120022 0.71 0.170724
Target:  5'- cUGCGCCaCCCgcgCCCCGuccugCCGCCCUUUg -3'
miRNA:   3'- -AUGCGG-GGGa--GGGGCcg---GGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 79409 0.71 0.187753
Target:  5'- cGCGCCCCUccuugCCCCGGaCCCccuuucGCCCa-- -3'
miRNA:   3'- aUGCGGGGGa----GGGGCC-GGG------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 22707 0.7 0.195893
Target:  5'- cGCGCCCgCCUCCCCcgcggggGGCgacgaccccgacgCCGCCCg-- -3'
miRNA:   3'- aUGCGGG-GGAGGGG-------CCG-------------GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 80202 0.7 0.20149
Target:  5'- -uCGCCCCg-CCCCcgacgucaGGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGgaGGGG--------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 80365 0.7 0.20626
Target:  5'- cGCGCCCCaaCCCCaGCCCcaGCCCc-- -3'
miRNA:   3'- aUGCGGGGgaGGGGcCGGG--CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23462 0.7 0.211127
Target:  5'- gGCGCCCCgggCCgCCgcggcgcaGGCCCGCCCg-- -3'
miRNA:   3'- aUGCGGGGga-GG-GG--------CCGGGCGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.