Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5536 | 5' | -67.2 | NC_001806.1 | + | 23462 | 0.7 | 0.211127 |
Target: 5'- gGCGCCCCgggCCgCCgcggcgcaGGCCCGCCCg-- -3' miRNA: 3'- aUGCGGGGga-GG-GG--------CCGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 143441 | 0.7 | 0.216093 |
Target: 5'- cGCGCUCCCaccCCCCGGgCCGUguCCUUg -3' miRNA: 3'- aUGCGGGGGa--GGGGCCgGGCG--GGAAa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 144341 | 0.7 | 0.221158 |
Target: 5'- --gGCCCCCcgCCCCGcGCCgGUCCa-- -3' miRNA: 3'- augCGGGGGa-GGGGC-CGGgCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 109384 | 0.7 | 0.221158 |
Target: 5'- cGCGCCCCCcgaCCCCGccCCCGaCCCg-- -3' miRNA: 3'- aUGCGGGGGa--GGGGCc-GGGC-GGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 53276 | 0.7 | 0.221158 |
Target: 5'- -cCGCCCCCgccguugagCCCCucGCCCGUCCUc- -3' miRNA: 3'- auGCGGGGGa--------GGGGc-CGGGCGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 34831 | 0.7 | 0.221158 |
Target: 5'- cGCGgCCCCUCCCgGcaGCCaCGCCCc-- -3' miRNA: 3'- aUGCgGGGGAGGGgC--CGG-GCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 9294 | 0.7 | 0.221158 |
Target: 5'- gACGUCCaCCUCgCCGGCggUCGCCCa-- -3' miRNA: 3'- aUGCGGG-GGAGgGGCCG--GGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 147435 | 0.69 | 0.226324 |
Target: 5'- cGCGCCUCUUCCUCGGacgcaCCGCCg--- -3' miRNA: 3'- aUGCGGGGGAGGGGCCg----GGCGGgaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 720 | 0.69 | 0.226324 |
Target: 5'- --gGCCccagCCCUCCCCGGCgCGUCCc-- -3' miRNA: 3'- augCGG----GGGAGGGGCCGgGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 28032 | 0.69 | 0.231061 |
Target: 5'- -cCGCCCCCUCUCCGcaucaccacagaaGCCCcGCCUa-- -3' miRNA: 3'- auGCGGGGGAGGGGC-------------CGGG-CGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 135786 | 0.69 | 0.231592 |
Target: 5'- gGCGCCCgCCccCCCUGGUCCugGCCCg-- -3' miRNA: 3'- aUGCGGG-GGa-GGGGCCGGG--CGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 74270 | 0.69 | 0.231592 |
Target: 5'- cGCGCCgCCaUUCCCGcCCCGCCCc-- -3' miRNA: 3'- aUGCGGgGG-AGGGGCcGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 143529 | 0.69 | 0.236963 |
Target: 5'- -cCGCCCaCCcggCCCGGCCCGgCCCg-- -3' miRNA: 3'- auGCGGG-GGag-GGGCCGGGC-GGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 4126 | 0.69 | 0.236963 |
Target: 5'- gGCGCCCCCcagaggCCCgGGCggcugUCGCCCa-- -3' miRNA: 3'- aUGCGGGGGa-----GGGgCCG-----GGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 79607 | 0.69 | 0.242438 |
Target: 5'- gGCGCCCCCcgaugCCaCCGcccCCCGCCCc-- -3' miRNA: 3'- aUGCGGGGGa----GG-GGCc--GGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 92333 | 0.69 | 0.242438 |
Target: 5'- cUGCGCCCCCagCCUaaCGGCCgGCCa--- -3' miRNA: 3'- -AUGCGGGGGa-GGG--GCCGGgCGGgaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 112894 | 0.69 | 0.242438 |
Target: 5'- -cCGCCCCCggccaCCCGGaucCCCGCgCCUUc -3' miRNA: 3'- auGCGGGGGag---GGGCC---GGGCG-GGAAa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 23817 | 0.69 | 0.248018 |
Target: 5'- uUugGCCCCCUgcgcgCCUCgGGCCCGCUg--- -3' miRNA: 3'- -AugCGGGGGA-----GGGG-CCGGGCGGgaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 135003 | 0.69 | 0.248018 |
Target: 5'- gAUGCCCCCgCCCUGGUCCGgCg--- -3' miRNA: 3'- aUGCGGGGGaGGGGCCGGGCgGgaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 23494 | 0.69 | 0.253704 |
Target: 5'- cGCGCCCCgUggccgugucgCgCCGGCCCGCCg--- -3' miRNA: 3'- aUGCGGGGgA----------GgGGCCGGGCGGgaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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