miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 20159 0.78 0.054357
Target:  5'- -cCGCCCCCcgccgCCCgGGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGa----GGGgCCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 59002 0.8 0.040996
Target:  5'- gGCGCCCCCUCCuCCGGC-UGCCCg-- -3'
miRNA:   3'- aUGCGGGGGAGG-GGCCGgGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 595 0.8 0.03604
Target:  5'- -cCGCCCCCUCCCCaGCCCcaGCCCUc- -3'
miRNA:   3'- auGCGGGGGAGGGGcCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 23391 0.81 0.034227
Target:  5'- cGCGcCCCCCUCCCCGcGCCCGCgCCc-- -3'
miRNA:   3'- aUGC-GGGGGAGGGGC-CGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 151129 0.81 0.033354
Target:  5'- gGCGCCCCCUCCCC-GCCCGCgCg-- -3'
miRNA:   3'- aUGCGGGGGAGGGGcCGGGCGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 101576 0.74 0.104773
Target:  5'- aAUGCCCCCUCCCCc-CUCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGAGGGGccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 150707 0.74 0.112863
Target:  5'- -cCGCCCCCgaggCGGCCCGCCCUg- -3'
miRNA:   3'- auGCGGGGGagggGCCGGGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 132504 0.72 0.147767
Target:  5'- -cCGCCCCCggggCCCUGGCCCccgucuuuGCCUUUc -3'
miRNA:   3'- auGCGGGGGa---GGGGCCGGG--------CGGGAAa -5'
5536 5' -67.2 NC_001806.1 + 982 0.72 0.147767
Target:  5'- -uCGCCCCCUCCCgccCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 87417 0.72 0.147767
Target:  5'- gGCGCCUCCcCCCCGGCgC-CCCUa- -3'
miRNA:   3'- aUGCGGGGGaGGGGCCGgGcGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 1530 0.72 0.144225
Target:  5'- gGCGCaaaagUCCCUCCgCGGCCCGCgCCa-- -3'
miRNA:   3'- aUGCG-----GGGGAGGgGCCGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 28923 0.72 0.140761
Target:  5'- -cCGCCCCCcuuuuuUCCCCuaGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGG------AGGGGc-CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30170 0.73 0.137374
Target:  5'- -cCGCCCCCcgCCCCgGGCCC-CCCg-- -3'
miRNA:   3'- auGCGGGGGa-GGGG-CCGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 143960 0.73 0.137374
Target:  5'- cACGCCCCCgccccugCCCCGGCgacccCCGgCCCg-- -3'
miRNA:   3'- aUGCGGGGGa------GGGGCCG-----GGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26745 0.73 0.134061
Target:  5'- cGCGCCCCUUCCgccuuccgCCGcGCCuCGCCCUc- -3'
miRNA:   3'- aUGCGGGGGAGG--------GGC-CGG-GCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 21132 0.73 0.132109
Target:  5'- aGCGCCCCggCUCCCCgGGCCCcaccgacgggccgccGCCCa-- -3'
miRNA:   3'- aUGCGGGG--GAGGGG-CCGGG---------------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 120758 0.73 0.130823
Target:  5'- gGCGCCUUC-CCCCGGCCaccuCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGaGGGGCCGG----GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26399 0.73 0.127656
Target:  5'- cGCgGCCCCCgccgcCCCCGG-CCGCCCg-- -3'
miRNA:   3'- aUG-CGGGGGa----GGGGCCgGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 82428 0.73 0.124561
Target:  5'- gGgGCCCgCCUCCCCGucCCCGCCCc-- -3'
miRNA:   3'- aUgCGGG-GGAGGGGCc-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 78925 0.73 0.118578
Target:  5'- aGCGgCCCCUCgCCCggGGCCCGCCgUg- -3'
miRNA:   3'- aUGCgGGGGAG-GGG--CCGGGCGGgAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.