miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 23817 0.69 0.248018
Target:  5'- uUugGCCCCCUgcgcgCCUCgGGCCCGCUg--- -3'
miRNA:   3'- -AugCGGGGGA-----GGGG-CCGGGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 24803 0.66 0.359546
Target:  5'- gGgGCCCUg-CCgCCGGCgCCGCCCg-- -3'
miRNA:   3'- aUgCGGGGgaGG-GGCCG-GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26399 0.73 0.127656
Target:  5'- cGCgGCCCCCgccgcCCCCGG-CCGCCCg-- -3'
miRNA:   3'- aUG-CGGGGGa----GGGGCCgGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26673 0.77 0.06334
Target:  5'- -cCGCCCCCcggCCCCGGCCCccaccGCCCg-- -3'
miRNA:   3'- auGCGGGGGa--GGGGCCGGG-----CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26745 0.73 0.134061
Target:  5'- cGCGCCCCUUCCgccuuccgCCGcGCCuCGCCCUc- -3'
miRNA:   3'- aUGCGGGGGAGG--------GGC-CGG-GCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 28032 0.69 0.231061
Target:  5'- -cCGCCCCCUCUCCGcaucaccacagaaGCCCcGCCUa-- -3'
miRNA:   3'- auGCGGGGGAGGGGC-------------CGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 28923 0.72 0.140761
Target:  5'- -cCGCCCCCcuuuuuUCCCCuaGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGG------AGGGGc-CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 29763 0.68 0.283748
Target:  5'- -cCGCCCCCcgccggacgCCCCGcGCCCcCCCa-- -3'
miRNA:   3'- auGCGGGGGa--------GGGGC-CGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30115 0.68 0.303088
Target:  5'- aGCGaCUCCC-CCCCGGCCUcuccccacagGCCCc-- -3'
miRNA:   3'- aUGC-GGGGGaGGGGCCGGG----------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30170 0.73 0.137374
Target:  5'- -cCGCCCCCcgCCCCgGGCCC-CCCg-- -3'
miRNA:   3'- auGCGGGGGa-GGGG-CCGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30271 0.71 0.166688
Target:  5'- --gGCCCCCgcgCCCCGGCCC-CCg--- -3'
miRNA:   3'- augCGGGGGa--GGGGCCGGGcGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 30457 0.75 0.094832
Target:  5'- gGCGCCgCCCcCUCCGGCgCCGCCCc-- -3'
miRNA:   3'- aUGCGG-GGGaGGGGCCG-GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 33339 0.67 0.309757
Target:  5'- gACGCCCCUuggccgCCCCGGCUgcagggggGCCCg-- -3'
miRNA:   3'- aUGCGGGGGa-----GGGGCCGGg-------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 34831 0.7 0.221158
Target:  5'- cGCGgCCCCUCCCgGcaGCCaCGCCCc-- -3'
miRNA:   3'- aUGCgGGGGAGGGgC--CGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 37577 0.71 0.170724
Target:  5'- gGCGUCaaagggCCCUCCuuGGCCCGCCa--- -3'
miRNA:   3'- aUGCGG------GGGAGGggCCGGGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 46663 0.66 0.367099
Target:  5'- cGCGCCCCaccgagcgaccuCgagCCCCaGCCCGCuCCg-- -3'
miRNA:   3'- aUGCGGGG------------Ga--GGGGcCGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 46983 0.66 0.398388
Target:  5'- cGCuGCCCaCUUCCCCccauaaGGUCCGUCCg-- -3'
miRNA:   3'- aUG-CGGG-GGAGGGG------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 47193 0.66 0.382531
Target:  5'- -cCGCCCCCcCgCCCGGCCgGggguCCCa-- -3'
miRNA:   3'- auGCGGGGGaG-GGGCCGGgC----GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 48091 0.67 0.326215
Target:  5'- gACGaCCCCUCCCaCccugcauggcaaccaGGCCCGCgCCUc- -3'
miRNA:   3'- aUGCgGGGGAGGG-G---------------CCGGGCG-GGAaa -5'
5536 5' -67.2 NC_001806.1 + 49130 0.67 0.309757
Target:  5'- cGCGCauccaCCCgcCCCCGcGCCuCGCCCg-- -3'
miRNA:   3'- aUGCGg----GGGa-GGGGC-CGG-GCGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.