miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 4480 0.66 0.352101
Target:  5'- gACGgaCCCCgCCCgaCGGCCCGCgCCUc- -3'
miRNA:   3'- aUGCg-GGGGaGGG--GCCGGGCG-GGAaa -5'
5536 5' -67.2 NC_001806.1 + 5523 0.67 0.337543
Target:  5'- --gGCCCCCcgcccCCCCGGCggGCCCa-- -3'
miRNA:   3'- augCGGGGGa----GGGGCCGggCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 5612 0.69 0.253704
Target:  5'- cGCGgCCCgUuggucgaacCCCCGGcCCCGCCCa-- -3'
miRNA:   3'- aUGCgGGGgA---------GGGGCC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 5841 0.76 0.081581
Target:  5'- -cCGUCCCCgggccCCCCGGuCCCGCCCg-- -3'
miRNA:   3'- auGCGGGGGa----GGGGCC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 6821 0.66 0.359546
Target:  5'- aGCGUCCCCugcugcgcucUCCCgGGCugCUGCCCg-- -3'
miRNA:   3'- aUGCGGGGG----------AGGGgCCG--GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 9294 0.7 0.221158
Target:  5'- gACGUCCaCCUCgCCGGCggUCGCCCa-- -3'
miRNA:   3'- aUGCGGG-GGAGgGGCCG--GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 11118 0.68 0.265396
Target:  5'- cGgGCCCUCUCCCCGGCU--UCCUg- -3'
miRNA:   3'- aUgCGGGGGAGGGGCCGGgcGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 19834 0.66 0.359546
Target:  5'- cGCGuccCCCCCUCCUCcGCCCaCCCa-- -3'
miRNA:   3'- aUGC---GGGGGAGGGGcCGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 20159 0.78 0.054357
Target:  5'- -cCGCCCCCcgccgCCCgGGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGa----GGGgCCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 20294 0.68 0.271404
Target:  5'- gGCGgCCCCgCCCCcuuggggcGGuCCCGCCCg-- -3'
miRNA:   3'- aUGCgGGGGaGGGG--------CC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 21132 0.73 0.132109
Target:  5'- aGCGCCCCggCUCCCCgGGCCCcaccgacgggccgccGCCCa-- -3'
miRNA:   3'- aUGCGGGG--GAGGGG-CCGGG---------------CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 21421 0.68 0.277521
Target:  5'- cGCGgCCUCgccgCCCCGGaccCCCGCCUUUc -3'
miRNA:   3'- aUGCgGGGGa---GGGGCC---GGGCGGGAAa -5'
5536 5' -67.2 NC_001806.1 + 21494 0.66 0.359546
Target:  5'- gACGCCgCCggcgaccgggCCCCGGCCCGgggCCg-- -3'
miRNA:   3'- aUGCGGgGGa---------GGGGCCGGGCg--GGaaa -5'
5536 5' -67.2 NC_001806.1 + 21834 0.72 0.162737
Target:  5'- cACcCCCCCUCUCCgaGGCCgCGCCCa-- -3'
miRNA:   3'- aUGcGGGGGAGGGG--CCGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 22707 0.7 0.195893
Target:  5'- cGCGCCCgCCUCCCCcgcggggGGCgacgaccccgacgCCGCCCg-- -3'
miRNA:   3'- aUGCGGG-GGAGGGG-------CCG-------------GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23293 0.66 0.352101
Target:  5'- aGCGCaagagUCCCggCCCGGCCCGgCCg-- -3'
miRNA:   3'- aUGCG-----GGGGagGGGCCGGGCgGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23391 0.81 0.034227
Target:  5'- cGCGcCCCCCUCCCCGcGCCCGCgCCc-- -3'
miRNA:   3'- aUGC-GGGGGAGGGGC-CGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 23423 0.78 0.057205
Target:  5'- cACGCCCCCggggCCCGaGCCCGCCCc-- -3'
miRNA:   3'- aUGCGGGGGag--GGGC-CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23462 0.7 0.211127
Target:  5'- gGCGCCCCgggCCgCCgcggcgcaGGCCCGCCCg-- -3'
miRNA:   3'- aUGCGGGGga-GG-GG--------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23494 0.69 0.253704
Target:  5'- cGCGCCCCgUggccgugucgCgCCGGCCCGCCg--- -3'
miRNA:   3'- aUGCGGGGgA----------GgGGCCGGGCGGgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.