miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 132504 0.72 0.147767
Target:  5'- -cCGCCCCCggggCCCUGGCCCccgucuuuGCCUUUc -3'
miRNA:   3'- auGCGGGGGa---GGGGCCGGG--------CGGGAAa -5'
5536 5' -67.2 NC_001806.1 + 131506 0.68 0.296531
Target:  5'- gUugGCCCCCggaCCCGGgCCGuuuCCCa-- -3'
miRNA:   3'- -AugCGGGGGag-GGGCCgGGC---GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 129646 0.67 0.337543
Target:  5'- --aGCUCCUgcaggcugCCCUGcGCCCGCCCg-- -3'
miRNA:   3'- augCGGGGGa-------GGGGC-CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 128853 0.67 0.33043
Target:  5'- cACGCCgUCCgcgCCCCGGUCaUGCCUUUc -3'
miRNA:   3'- aUGCGG-GGGa--GGGGCCGG-GCGGGAAa -5'
5536 5' -67.2 NC_001806.1 + 126487 0.68 0.295881
Target:  5'- cGCGCCCgggcgCgUCCCCGGCCCggaggagGCUCUc- -3'
miRNA:   3'- aUGCGGG-----GgAGGGGCCGGG-------CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 125721 0.75 0.087969
Target:  5'- cGCGCCCCUcuggccaucggUCCCCucuGGCCCGCCUg-- -3'
miRNA:   3'- aUGCGGGGG-----------AGGGG---CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 120803 0.68 0.296531
Target:  5'- gUugGCCCCCgCCUCuggGGUuuGCCCUc- -3'
miRNA:   3'- -AugCGGGGGaGGGG---CCGggCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 120758 0.73 0.130823
Target:  5'- gGCGCCUUC-CCCCGGCCaccuCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGaGGGGCCGG----GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 120350 0.66 0.352101
Target:  5'- -uCGUCCCgCUCggcgacgaccuCCCGGCCCGCUUUg- -3'
miRNA:   3'- auGCGGGG-GAG-----------GGGCCGGGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 120022 0.71 0.170724
Target:  5'- cUGCGCCaCCCgcgCCCCGuccugCCGCCCUUUg -3'
miRNA:   3'- -AUGCGG-GGGa--GGGGCcg---GGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 119254 0.68 0.290084
Target:  5'- cGCGUCCCCgcguccgcagCCCuUGGCCCgGCCCc-- -3'
miRNA:   3'- aUGCGGGGGa---------GGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 114535 0.67 0.309757
Target:  5'- cGCGCCCaauuuCC-CCCCGGCCCuGCgCg-- -3'
miRNA:   3'- aUGCGGG-----GGaGGGGCCGGG-CGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 112894 0.69 0.242438
Target:  5'- -cCGCCCCCggccaCCCGGaucCCCGCgCCUUc -3'
miRNA:   3'- auGCGGGGGag---GGGCC---GGGCG-GGAAa -5'
5536 5' -67.2 NC_001806.1 + 112383 0.68 0.303088
Target:  5'- cACGCagCCCUCCgUGGCCgUGCCCc-- -3'
miRNA:   3'- aUGCGg-GGGAGGgGCCGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 112009 0.66 0.374762
Target:  5'- aACGCCgCCUUCagCCUGGCCaccgaggccauCGCCCUg- -3'
miRNA:   3'- aUGCGG-GGGAG--GGGCCGG-----------GCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 109384 0.7 0.221158
Target:  5'- cGCGCCCCCcgaCCCCGccCCCGaCCCg-- -3'
miRNA:   3'- aUGCGGGGGa--GGGGCc-GGGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 104805 0.72 0.158871
Target:  5'- cAUGCCCCgC-CCCCGGCCCucaCCCUc- -3'
miRNA:   3'- aUGCGGGG-GaGGGGCCGGGc--GGGAaa -5'
5536 5' -67.2 NC_001806.1 + 102964 0.68 0.290084
Target:  5'- gGCGCCCCCccgucgCCCCcaCCCGCCg--- -3'
miRNA:   3'- aUGCGGGGGa-----GGGGccGGGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 101576 0.74 0.104773
Target:  5'- aAUGCCCCCUCCCCc-CUCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGAGGGGccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 97806 0.66 0.352101
Target:  5'- cACGCCCCCgccgCCCgGGgCCaGCgCCa-- -3'
miRNA:   3'- aUGCGGGGGa---GGGgCCgGG-CG-GGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.