miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 152047 0.67 0.309757
Target:  5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3'
miRNA:   3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 152003 0.68 0.283748
Target:  5'- ---cCCCCgCUCCCgCGGCCCcGCCCc-- -3'
miRNA:   3'- augcGGGG-GAGGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 151129 0.81 0.033354
Target:  5'- gGCGCCCCCUCCCC-GCCCGCgCg-- -3'
miRNA:   3'- aUGCGGGGGAGGGGcCGGGCGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 150950 0.66 0.374762
Target:  5'- gGCGCCggaaCCgagCCCgguCGGCCCGCUCg-- -3'
miRNA:   3'- aUGCGGg---GGa--GGG---GCCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 150707 0.74 0.112863
Target:  5'- -cCGCCCCCgaggCGGCCCGCCCUg- -3'
miRNA:   3'- auGCGGGGGagggGCCGGGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 148259 1.02 0.000751
Target:  5'- uUACGCCCCCUCCCCGGCCCGCCCUUUc -3'
miRNA:   3'- -AUGCGGGGGAGGGGCCGGGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 147991 0.66 0.367099
Target:  5'- gACGCCCCCcgcggcgCCgCGGCUCGCgaCUg- -3'
miRNA:   3'- aUGCGGGGGa------GGgGCCGGGCGg-GAaa -5'
5536 5' -67.2 NC_001806.1 + 147435 0.69 0.226324
Target:  5'- cGCGCCUCUUCCUCGGacgcaCCGCCg--- -3'
miRNA:   3'- aUGCGGGGGAGGGGCCg----GGCGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 147148 0.66 0.374762
Target:  5'- -uUGUCuCCCUCCCagggcaccgaCGGcCCCGCCCg-- -3'
miRNA:   3'- auGCGG-GGGAGGG----------GCC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 146652 0.68 0.296531
Target:  5'- gACGCCCCCugcUCCCCGGaCCacggguGCCg--- -3'
miRNA:   3'- aUGCGGGGG---AGGGGCC-GGg-----CGGgaaa -5'
5536 5' -67.2 NC_001806.1 + 145978 0.67 0.33043
Target:  5'- -cCGaCCCCCUuuugggcgCCCCGuCCCGCCCc-- -3'
miRNA:   3'- auGC-GGGGGA--------GGGGCcGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 144959 0.67 0.309757
Target:  5'- --gGCCCCCguggcggCCCGGCCCgggGCCCc-- -3'
miRNA:   3'- augCGGGGGag-----GGGCCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 144341 0.7 0.221158
Target:  5'- --gGCCCCCcgCCCCGcGCCgGUCCa-- -3'
miRNA:   3'- augCGGGGGa-GGGGC-CGGgCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 143960 0.73 0.137374
Target:  5'- cACGCCCCCgccccugCCCCGGCgacccCCGgCCCg-- -3'
miRNA:   3'- aUGCGGGGGa------GGGGCCG-----GGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 143529 0.69 0.236963
Target:  5'- -cCGCCCaCCcggCCCGGCCCGgCCCg-- -3'
miRNA:   3'- auGCGGG-GGag-GGGCCGGGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 143441 0.7 0.216093
Target:  5'- cGCGCUCCCaccCCCCGGgCCGUguCCUUg -3'
miRNA:   3'- aUGCGGGGGa--GGGGCCgGGCG--GGAAa -5'
5536 5' -67.2 NC_001806.1 + 140161 0.69 0.253704
Target:  5'- cGCGCCUCCacCCCCGacaaccGCCUGCCCc-- -3'
miRNA:   3'- aUGCGGGGGa-GGGGC------CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 137800 0.66 0.397586
Target:  5'- aACGCCCuguaccacaCC-CCCCaguacgcGGCCCGCCUg-- -3'
miRNA:   3'- aUGCGGG---------GGaGGGG-------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 135786 0.69 0.231592
Target:  5'- gGCGCCCgCCccCCCUGGUCCugGCCCg-- -3'
miRNA:   3'- aUGCGGG-GGa-GGGGCCGGG--CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 135003 0.69 0.248018
Target:  5'- gAUGCCCCCgCCCUGGUCCGgCg--- -3'
miRNA:   3'- aUGCGGGGGaGGGGCCGGGCgGgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.