Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 3' | -58.3 | NC_001806.1 | + | 84413 | 0.66 | 0.835911 |
Target: 5'- cGAGGCugaCCCCGAGAcgcagcccgGGGaCGGG-GGCc -3' miRNA: 3'- uCUCUG---GGGGCUCUa--------CCC-GUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 29797 | 0.72 | 0.499578 |
Target: 5'- cAGAGGcgccgccgcgcCCCCCGuGAcGGGCGGGgcGUc -3' miRNA: 3'- -UCUCU-----------GGGGGCuCUaCCCGUCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 4412 | 0.71 | 0.518729 |
Target: 5'- --cGGCCUCgGAGA-GGGgGGGUGGCc -3' miRNA: 3'- ucuCUGGGGgCUCUaCCCgUCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 28710 | 0.71 | 0.535232 |
Target: 5'- uGGGACCCCCGAcuccggugcgucugGA-GGGCGGG-AGa -3' miRNA: 3'- uCUCUGGGGGCU--------------CUaCCCGUCCaUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 83798 | 0.71 | 0.538164 |
Target: 5'- --uGGCCUCCGGGGgcgaggaggGGGCGGGgucGGCg -3' miRNA: 3'- ucuCUGGGGGCUCUa--------CCCGUCCa--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 68938 | 0.71 | 0.542082 |
Target: 5'- uGAcGACCCCCGAGcgggGGGCuguGGUcccgccgccccuguuGGCg -3' miRNA: 3'- uCU-CUGGGGGCUCua--CCCGu--CCA---------------UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 70287 | 0.71 | 0.547976 |
Target: 5'- --cGcCCCCCGAGGUGGGCAcc-AGCc -3' miRNA: 3'- ucuCuGGGGGCUCUACCCGUccaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 59103 | 0.71 | 0.556854 |
Target: 5'- uGGGAacaCCCCacagugaCGAGGUGGGCuucGGUGGUg -3' miRNA: 3'- uCUCU---GGGG-------GCUCUACCCGu--CCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 23525 | 0.71 | 0.557843 |
Target: 5'- cGAGGgCCCCGAcccccUGGGCGGcUGGCg -3' miRNA: 3'- uCUCUgGGGGCUcu---ACCCGUCcAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 22068 | 0.72 | 0.499578 |
Target: 5'- -cGGGCCCCCGcccccgGGGCGGGU-GCu -3' miRNA: 3'- ucUCUGGGGGCucua--CCCGUCCAuCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 151431 | 0.72 | 0.45317 |
Target: 5'- cGGGGGCCCaCCGGcGggGGGCGGcGgcggGGCg -3' miRNA: 3'- -UCUCUGGG-GGCU-CuaCCCGUC-Ca---UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 2796 | 0.73 | 0.44417 |
Target: 5'- cGGGGCgCCgCGGGcUGGGCGGGggcgGGCu -3' miRNA: 3'- uCUCUGgGG-GCUCuACCCGUCCa---UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 34363 | 0.83 | 0.112851 |
Target: 5'- gGGGGACCggggcuggguauCCCGAGGUGGGUGGGUGGg -3' miRNA: 3'- -UCUCUGG------------GGGCUCUACCCGUCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72539 | 0.81 | 0.142088 |
Target: 5'- -uGGGCCCCCGGGAggGGGUAGGgGGCc -3' miRNA: 3'- ucUCUGGGGGCUCUa-CCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 50795 | 0.78 | 0.222006 |
Target: 5'- --cGGCCCCCGAGGUGGGCAcGUAc- -3' miRNA: 3'- ucuCUGGGGGCUCUACCCGUcCAUcg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 19907 | 0.75 | 0.320284 |
Target: 5'- cGGAGGCCCCCGGGGUGcGUccccuguguuucguGGGUGGg -3' miRNA: 3'- -UCUCUGGGGGCUCUACcCG--------------UCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 20718 | 0.74 | 0.360112 |
Target: 5'- -uGGGCCCgCCGGGG-GGGCGGGgGGCc -3' miRNA: 3'- ucUCUGGG-GGCUCUaCCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 10680 | 0.73 | 0.417788 |
Target: 5'- -uAGACCCCCGgucgcAGAUGGGgcCGGGggGGCg -3' miRNA: 3'- ucUCUGGGGGC-----UCUACCC--GUCCa-UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 54121 | 0.73 | 0.435271 |
Target: 5'- gGGGGugUCCCGGGGcccagGGGCcGGUAGg -3' miRNA: 3'- -UCUCugGGGGCUCUa----CCCGuCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 32190 | 0.73 | 0.44417 |
Target: 5'- uAGAGACCgCCGGGGgacgugGGGUuGGUGuGCa -3' miRNA: 3'- -UCUCUGGgGGCUCUa-----CCCGuCCAU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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