miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 84413 0.66 0.835911
Target:  5'- cGAGGCugaCCCCGAGAcgcagcccgGGGaCGGG-GGCc -3'
miRNA:   3'- uCUCUG---GGGGCUCUa--------CCC-GUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 29797 0.72 0.499578
Target:  5'- cAGAGGcgccgccgcgcCCCCCGuGAcGGGCGGGgcGUc -3'
miRNA:   3'- -UCUCU-----------GGGGGCuCUaCCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 4412 0.71 0.518729
Target:  5'- --cGGCCUCgGAGA-GGGgGGGUGGCc -3'
miRNA:   3'- ucuCUGGGGgCUCUaCCCgUCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 28710 0.71 0.535232
Target:  5'- uGGGACCCCCGAcuccggugcgucugGA-GGGCGGG-AGa -3'
miRNA:   3'- uCUCUGGGGGCU--------------CUaCCCGUCCaUCg -5'
5537 3' -58.3 NC_001806.1 + 83798 0.71 0.538164
Target:  5'- --uGGCCUCCGGGGgcgaggaggGGGCGGGgucGGCg -3'
miRNA:   3'- ucuCUGGGGGCUCUa--------CCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 68938 0.71 0.542082
Target:  5'- uGAcGACCCCCGAGcgggGGGCuguGGUcccgccgccccuguuGGCg -3'
miRNA:   3'- uCU-CUGGGGGCUCua--CCCGu--CCA---------------UCG- -5'
5537 3' -58.3 NC_001806.1 + 70287 0.71 0.547976
Target:  5'- --cGcCCCCCGAGGUGGGCAcc-AGCc -3'
miRNA:   3'- ucuCuGGGGGCUCUACCCGUccaUCG- -5'
5537 3' -58.3 NC_001806.1 + 59103 0.71 0.556854
Target:  5'- uGGGAacaCCCCacagugaCGAGGUGGGCuucGGUGGUg -3'
miRNA:   3'- uCUCU---GGGG-------GCUCUACCCGu--CCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 23525 0.71 0.557843
Target:  5'- cGAGGgCCCCGAcccccUGGGCGGcUGGCg -3'
miRNA:   3'- uCUCUgGGGGCUcu---ACCCGUCcAUCG- -5'
5537 3' -58.3 NC_001806.1 + 22068 0.72 0.499578
Target:  5'- -cGGGCCCCCGcccccgGGGCGGGU-GCu -3'
miRNA:   3'- ucUCUGGGGGCucua--CCCGUCCAuCG- -5'
5537 3' -58.3 NC_001806.1 + 151431 0.72 0.45317
Target:  5'- cGGGGGCCCaCCGGcGggGGGCGGcGgcggGGCg -3'
miRNA:   3'- -UCUCUGGG-GGCU-CuaCCCGUC-Ca---UCG- -5'
5537 3' -58.3 NC_001806.1 + 2796 0.73 0.44417
Target:  5'- cGGGGCgCCgCGGGcUGGGCGGGggcgGGCu -3'
miRNA:   3'- uCUCUGgGG-GCUCuACCCGUCCa---UCG- -5'
5537 3' -58.3 NC_001806.1 + 34363 0.83 0.112851
Target:  5'- gGGGGACCggggcuggguauCCCGAGGUGGGUGGGUGGg -3'
miRNA:   3'- -UCUCUGG------------GGGCUCUACCCGUCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 72539 0.81 0.142088
Target:  5'- -uGGGCCCCCGGGAggGGGUAGGgGGCc -3'
miRNA:   3'- ucUCUGGGGGCUCUa-CCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 50795 0.78 0.222006
Target:  5'- --cGGCCCCCGAGGUGGGCAcGUAc- -3'
miRNA:   3'- ucuCUGGGGGCUCUACCCGUcCAUcg -5'
5537 3' -58.3 NC_001806.1 + 19907 0.75 0.320284
Target:  5'- cGGAGGCCCCCGGGGUGcGUccccuguguuucguGGGUGGg -3'
miRNA:   3'- -UCUCUGGGGGCUCUACcCG--------------UCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 20718 0.74 0.360112
Target:  5'- -uGGGCCCgCCGGGG-GGGCGGGgGGCc -3'
miRNA:   3'- ucUCUGGG-GGCUCUaCCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 10680 0.73 0.417788
Target:  5'- -uAGACCCCCGgucgcAGAUGGGgcCGGGggGGCg -3'
miRNA:   3'- ucUCUGGGGGC-----UCUACCC--GUCCa-UCG- -5'
5537 3' -58.3 NC_001806.1 + 54121 0.73 0.435271
Target:  5'- gGGGGugUCCCGGGGcccagGGGCcGGUAGg -3'
miRNA:   3'- -UCUCugGGGGCUCUa----CCCGuCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 32190 0.73 0.44417
Target:  5'- uAGAGACCgCCGGGGgacgugGGGUuGGUGuGCa -3'
miRNA:   3'- -UCUCUGGgGGCUCUa-----CCCGuCCAU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.