miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 32 0.67 0.756379
Target:  5'- --cGACCCCCGGGGgguguguuuUGGGgGGGgcccguuuucGGCg -3'
miRNA:   3'- ucuCUGGGGGCUCU---------ACCCgUCCa---------UCG- -5'
5537 3' -58.3 NC_001806.1 + 2796 0.73 0.44417
Target:  5'- cGGGGCgCCgCGGGcUGGGCGGGggcgGGCu -3'
miRNA:   3'- uCUCUGgGG-GCUCuACCCGUCCa---UCG- -5'
5537 3' -58.3 NC_001806.1 + 4412 0.71 0.518729
Target:  5'- --cGGCCUCgGAGA-GGGgGGGUGGCc -3'
miRNA:   3'- ucuCUGGGGgCUCUaCCCgUCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 6072 0.68 0.678264
Target:  5'- --cGGCCCCgGGGgcGGGCccGGGcGGCg -3'
miRNA:   3'- ucuCUGGGGgCUCuaCCCG--UCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 9786 0.7 0.59775
Target:  5'- gAGGGGCCCCgaCGugcGGGUGGGUGGGcucGGCc -3'
miRNA:   3'- -UCUCUGGGG--GC---UCUACCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 10367 0.67 0.765756
Target:  5'- cGGGGGCgcugggccaagaCCUCGGGG-GGGCGGGgggaGGCg -3'
miRNA:   3'- -UCUCUG------------GGGGCUCUaCCCGUCCa---UCG- -5'
5537 3' -58.3 NC_001806.1 + 10680 0.73 0.417788
Target:  5'- -uAGACCCCCGgucgcAGAUGGGgcCGGGggGGCg -3'
miRNA:   3'- ucUCUGGGGGC-----UCUACCC--GUCCa-UCG- -5'
5537 3' -58.3 NC_001806.1 + 13521 0.66 0.802026
Target:  5'- gGGGGGCCUCCGAcGGUGcGUuuAGG-AGCa -3'
miRNA:   3'- -UCUCUGGGGGCU-CUACcCG--UCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 13652 0.69 0.638045
Target:  5'- -cGGACCCCCG-GA-GGGUcGGUcAGCu -3'
miRNA:   3'- ucUCUGGGGGCuCUaCCCGuCCA-UCG- -5'
5537 3' -58.3 NC_001806.1 + 17171 0.67 0.774098
Target:  5'- aAGGGccCCCCCGGGAa-GGCGGGUcuguggaccguagGGCc -3'
miRNA:   3'- -UCUCu-GGGGGCUCUacCCGUCCA-------------UCG- -5'
5537 3' -58.3 NC_001806.1 + 18569 0.66 0.809877
Target:  5'- gAGGGACCCgCGGGGUucugGGGUuuccagcguaacgGGGgagggGGCa -3'
miRNA:   3'- -UCUCUGGGgGCUCUA----CCCG-------------UCCa----UCG- -5'
5537 3' -58.3 NC_001806.1 + 19476 0.69 0.658195
Target:  5'- -cAGACUCCgaUGAGAggGGGCGGGaagGGCg -3'
miRNA:   3'- ucUCUGGGG--GCUCUa-CCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 19907 0.75 0.320284
Target:  5'- cGGAGGCCCCCGGGGUGcGUccccuguguuucguGGGUGGg -3'
miRNA:   3'- -UCUCUGGGGGCUCUACcCG--------------UCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 20552 0.66 0.802026
Target:  5'- uGAGAUgCCau-GcgGGGCGGGgcGCg -3'
miRNA:   3'- uCUCUGgGGgcuCuaCCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 20659 0.67 0.784157
Target:  5'- -cGGGCCCCCGGcgugccggcGucgGGGCGGGgucguGCa -3'
miRNA:   3'- ucUCUGGGGGCU---------Cua-CCCGUCCau---CG- -5'
5537 3' -58.3 NC_001806.1 + 20718 0.74 0.360112
Target:  5'- -uGGGCCCgCCGGGG-GGGCGGGgGGCc -3'
miRNA:   3'- ucUCUGGG-GGCUCUaCCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 21198 0.68 0.678264
Target:  5'- gGGGGGCCCUCGGGugGGGCgcggagacggAGGagGGCg -3'
miRNA:   3'- -UCUCUGGGGGCUCuaCCCG----------UCCa-UCG- -5'
5537 3' -58.3 NC_001806.1 + 22068 0.72 0.499578
Target:  5'- -cGGGCCCCCGcccccgGGGCGGGU-GCu -3'
miRNA:   3'- ucUCUGGGGGCucua--CCCGUCCAuCG- -5'
5537 3' -58.3 NC_001806.1 + 23525 0.71 0.557843
Target:  5'- cGAGGgCCCCGAcccccUGGGCGGcUGGCg -3'
miRNA:   3'- uCUCUgGGGGCUcu---ACCCGUCcAUCG- -5'
5537 3' -58.3 NC_001806.1 + 24993 0.7 0.58772
Target:  5'- cGGGGugCUguaacgggCCGGGAcgGGGCGGGgcGCu -3'
miRNA:   3'- -UCUCugGG--------GGCUCUa-CCCGUCCauCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.