miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 28288 0.68 0.717892
Target:  5'- gGGGGACCCCCacucauacacggGAGccGGGCgccauguuGGGgcGCc -3'
miRNA:   3'- -UCUCUGGGGG------------CUCuaCCCG--------UCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 28710 0.71 0.535232
Target:  5'- uGGGACCCCCGAcuccggugcgucugGA-GGGCGGG-AGa -3'
miRNA:   3'- uCUCUGGGGGCU--------------CUaCCCGUCCaUCg -5'
5537 3' -58.3 NC_001806.1 + 29797 0.72 0.499578
Target:  5'- cAGAGGcgccgccgcgcCCCCCGuGAcGGGCGGGgcGUc -3'
miRNA:   3'- -UCUCU-----------GGGGGCuCUaCCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 31348 0.67 0.746895
Target:  5'- aAGGGACgCCCCccguguuugugGGGAgGGGgGGGUcgGGCg -3'
miRNA:   3'- -UCUCUG-GGGG-----------CUCUaCCCgUCCA--UCG- -5'
5537 3' -58.3 NC_001806.1 + 32190 0.73 0.44417
Target:  5'- uAGAGACCgCCGGGGgacgugGGGUuGGUGuGCa -3'
miRNA:   3'- -UCUCUGGgGGCUCUa-----CCCGuCCAU-CG- -5'
5537 3' -58.3 NC_001806.1 + 33985 0.68 0.717892
Target:  5'- cGGGGGUCgCCGGGGcagGGGCGGGggcgugGGCg -3'
miRNA:   3'- -UCUCUGGgGGCUCUa--CCCGUCCa-----UCG- -5'
5537 3' -58.3 NC_001806.1 + 34363 0.83 0.112851
Target:  5'- gGGGGACCggggcuggguauCCCGAGGUGGGUGGGUGGg -3'
miRNA:   3'- -UCUCUGG------------GGGCUCUACCCGUCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 38526 0.69 0.668244
Target:  5'- cGGAuauGGCCUCUGGuGGUGGcGCAccGGUAGCg -3'
miRNA:   3'- -UCU---CUGGGGGCU-CUACC-CGU--CCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 40530 0.68 0.714953
Target:  5'- -cGGAUCuCCCGGGGggaagcgagauaggUGGGCGGGgcGUg -3'
miRNA:   3'- ucUCUGG-GGGCUCU--------------ACCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 42387 0.68 0.687251
Target:  5'- cGuGGCCCCCGcgccccccAGAcgcUGGGCcugaagcAGGUAGUa -3'
miRNA:   3'- uCuCUGGGGGC--------UCU---ACCCG-------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 43483 0.67 0.746895
Target:  5'- cGAGGCCCCCacGAucGAcgGGGCc-GUGGCg -3'
miRNA:   3'- uCUCUGGGGG--CU--CUa-CCCGucCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 45307 0.66 0.827691
Target:  5'- cGGGGAgCCgCCCGGcGAggaGGGCGGGc-GCg -3'
miRNA:   3'- -UCUCU-GG-GGGCU-CUa--CCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 46182 0.69 0.648126
Target:  5'- cGGGcCCCCCGAacccaGCGGGUGGCg -3'
miRNA:   3'- uCUCuGGGGGCUcuaccCGUCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 48292 0.71 0.557843
Target:  5'- cGAcGCCCCCGaAGAggcgGGGCuGGcGGCu -3'
miRNA:   3'- uCUcUGGGGGC-UCUa---CCCGuCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 48890 0.66 0.815895
Target:  5'- cGGGACCguuucccauuuggCCGGGGgcugGGGCggcGGGUAGCc -3'
miRNA:   3'- uCUCUGGg------------GGCUCUa---CCCG---UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 50795 0.78 0.222006
Target:  5'- --cGGCCCCCGAGGUGGGCAcGUAc- -3'
miRNA:   3'- ucuCUGGGGGCUCUACCCGUcCAUcg -5'
5537 3' -58.3 NC_001806.1 + 54121 0.73 0.435271
Target:  5'- gGGGGugUCCCGGGGcccagGGGCcGGUAGg -3'
miRNA:   3'- -UCUCugGGGGCUCUa----CCCGuCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 55328 0.69 0.658195
Target:  5'- aGGAGuCCCCCGGGugGGGC-GGUGa- -3'
miRNA:   3'- -UCUCuGGGGGCUCuaCCCGuCCAUcg -5'
5537 3' -58.3 NC_001806.1 + 59103 0.71 0.556854
Target:  5'- uGGGAacaCCCCacagugaCGAGGUGGGCuucGGUGGUg -3'
miRNA:   3'- uCUCU---GGGG-------GCUCUACCCGu--CCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 63915 0.68 0.727643
Target:  5'- cGAuGCCCCCGuuGcGGGCgAGGaUGGCa -3'
miRNA:   3'- uCUcUGGGGGCucUaCCCG-UCC-AUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.