Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 3' | -58.3 | NC_001806.1 | + | 28288 | 0.68 | 0.717892 |
Target: 5'- gGGGGACCCCCacucauacacggGAGccGGGCgccauguuGGGgcGCc -3' miRNA: 3'- -UCUCUGGGGG------------CUCuaCCCG--------UCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 28710 | 0.71 | 0.535232 |
Target: 5'- uGGGACCCCCGAcuccggugcgucugGA-GGGCGGG-AGa -3' miRNA: 3'- uCUCUGGGGGCU--------------CUaCCCGUCCaUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 29797 | 0.72 | 0.499578 |
Target: 5'- cAGAGGcgccgccgcgcCCCCCGuGAcGGGCGGGgcGUc -3' miRNA: 3'- -UCUCU-----------GGGGGCuCUaCCCGUCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 31348 | 0.67 | 0.746895 |
Target: 5'- aAGGGACgCCCCccguguuugugGGGAgGGGgGGGUcgGGCg -3' miRNA: 3'- -UCUCUG-GGGG-----------CUCUaCCCgUCCA--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 32190 | 0.73 | 0.44417 |
Target: 5'- uAGAGACCgCCGGGGgacgugGGGUuGGUGuGCa -3' miRNA: 3'- -UCUCUGGgGGCUCUa-----CCCGuCCAU-CG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 33985 | 0.68 | 0.717892 |
Target: 5'- cGGGGGUCgCCGGGGcagGGGCGGGggcgugGGCg -3' miRNA: 3'- -UCUCUGGgGGCUCUa--CCCGUCCa-----UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 34363 | 0.83 | 0.112851 |
Target: 5'- gGGGGACCggggcuggguauCCCGAGGUGGGUGGGUGGg -3' miRNA: 3'- -UCUCUGG------------GGGCUCUACCCGUCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 38526 | 0.69 | 0.668244 |
Target: 5'- cGGAuauGGCCUCUGGuGGUGGcGCAccGGUAGCg -3' miRNA: 3'- -UCU---CUGGGGGCU-CUACC-CGU--CCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 40530 | 0.68 | 0.714953 |
Target: 5'- -cGGAUCuCCCGGGGggaagcgagauaggUGGGCGGGgcGUg -3' miRNA: 3'- ucUCUGG-GGGCUCU--------------ACCCGUCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 42387 | 0.68 | 0.687251 |
Target: 5'- cGuGGCCCCCGcgccccccAGAcgcUGGGCcugaagcAGGUAGUa -3' miRNA: 3'- uCuCUGGGGGC--------UCU---ACCCG-------UCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 43483 | 0.67 | 0.746895 |
Target: 5'- cGAGGCCCCCacGAucGAcgGGGCc-GUGGCg -3' miRNA: 3'- uCUCUGGGGG--CU--CUa-CCCGucCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 45307 | 0.66 | 0.827691 |
Target: 5'- cGGGGAgCCgCCCGGcGAggaGGGCGGGc-GCg -3' miRNA: 3'- -UCUCU-GG-GGGCU-CUa--CCCGUCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 46182 | 0.69 | 0.648126 |
Target: 5'- cGGGcCCCCCGAacccaGCGGGUGGCg -3' miRNA: 3'- uCUCuGGGGGCUcuaccCGUCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 48292 | 0.71 | 0.557843 |
Target: 5'- cGAcGCCCCCGaAGAggcgGGGCuGGcGGCu -3' miRNA: 3'- uCUcUGGGGGC-UCUa---CCCGuCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 48890 | 0.66 | 0.815895 |
Target: 5'- cGGGACCguuucccauuuggCCGGGGgcugGGGCggcGGGUAGCc -3' miRNA: 3'- uCUCUGGg------------GGCUCUa---CCCG---UCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 50795 | 0.78 | 0.222006 |
Target: 5'- --cGGCCCCCGAGGUGGGCAcGUAc- -3' miRNA: 3'- ucuCUGGGGGCUCUACCCGUcCAUcg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 54121 | 0.73 | 0.435271 |
Target: 5'- gGGGGugUCCCGGGGcccagGGGCcGGUAGg -3' miRNA: 3'- -UCUCugGGGGCUCUa----CCCGuCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 55328 | 0.69 | 0.658195 |
Target: 5'- aGGAGuCCCCCGGGugGGGC-GGUGa- -3' miRNA: 3'- -UCUCuGGGGGCUCuaCCCGuCCAUcg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 59103 | 0.71 | 0.556854 |
Target: 5'- uGGGAacaCCCCacagugaCGAGGUGGGCuucGGUGGUg -3' miRNA: 3'- uCUCU---GGGG-------GCUCUACCCGu--CCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 63915 | 0.68 | 0.727643 |
Target: 5'- cGAuGCCCCCGuuGcGGGCgAGGaUGGCa -3' miRNA: 3'- uCUcUGGGGGCucUaCCCG-UCC-AUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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