Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 3' | -58.3 | NC_001806.1 | + | 109399 | 0.68 | 0.688248 |
Target: 5'- ---cGCCCCCGAcccggcGAUGGGUcguGGGgcGCg -3' miRNA: 3'- ucucUGGGGGCU------CUACCCG---UCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 99755 | 0.68 | 0.727643 |
Target: 5'- --cGGCCUCCGGGGgacaaaGGGCcGGGUGGg -3' miRNA: 3'- ucuCUGGGGGCUCUa-----CCCG-UCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 96378 | 0.68 | 0.678264 |
Target: 5'- cAGGGcGCCCCCGcGcggGGGCGccGGUGGUu -3' miRNA: 3'- -UCUC-UGGGGGCuCua-CCCGU--CCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 95390 | 0.67 | 0.765756 |
Target: 5'- gGGAG-CUCCCGg---GGGCGGG-GGCg -3' miRNA: 3'- -UCUCuGGGGGCucuaCCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 93898 | 0.69 | 0.66724 |
Target: 5'- gGGAGGCCgCCCcgaaGAGGgggaccccgGGGCucagccagacgccGGGUAGCg -3' miRNA: 3'- -UCUCUGG-GGG----CUCUa--------CCCG-------------UCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 93275 | 0.67 | 0.775019 |
Target: 5'- cGGGGcauuAUCUCCGAGGgcgGGGCGGccgucgccaGUAGCg -3' miRNA: 3'- -UCUC----UGGGGGCUCUa--CCCGUC---------CAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 90994 | 0.69 | 0.648126 |
Target: 5'- -aAGACCCCgCGGGgcGGGCGcgacGGcGGCg -3' miRNA: 3'- ucUCUGGGG-GCUCuaCCCGU----CCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 86014 | 0.68 | 0.727643 |
Target: 5'- cGGGGGCgCUuggCCGGGGaGGGCAGGgccGCg -3' miRNA: 3'- -UCUCUG-GG---GGCUCUaCCCGUCCau-CG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 84413 | 0.66 | 0.835911 |
Target: 5'- cGAGGCugaCCCCGAGAcgcagcccgGGGaCGGG-GGCc -3' miRNA: 3'- uCUCUG---GGGGCUCUa--------CCC-GUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 83798 | 0.71 | 0.538164 |
Target: 5'- --uGGCCUCCGGGGgcgaggaggGGGCGGGgucGGCg -3' miRNA: 3'- ucuCUGGGGGCUCUa--------CCCGUCCa--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 82490 | 0.67 | 0.774098 |
Target: 5'- cGAGACCCUCGAa---GGCgucaccuGGGUGGCc -3' miRNA: 3'- uCUCUGGGGGCUcuacCCG-------UCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 81476 | 0.7 | 0.59775 |
Target: 5'- uGGGugCCCUGGG--GGuGCGGGUGGUu -3' miRNA: 3'- uCUCugGGGGCUCuaCC-CGUCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 79046 | 0.7 | 0.607804 |
Target: 5'- cGAGGCCaCCGAGGagcucccguuUGuGGCGGGcGGCg -3' miRNA: 3'- uCUCUGGgGGCUCU----------AC-CCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72852 | 0.66 | 0.819299 |
Target: 5'- cGAGACaugcggguCCUgGAGAUGGGCGucgucccgguuGGUcGGCa -3' miRNA: 3'- uCUCUG--------GGGgCUCUACCCGU-----------CCA-UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72694 | 0.68 | 0.70807 |
Target: 5'- -cGGGCgCCCGAcGAuguaUGGGC-GGUGGCc -3' miRNA: 3'- ucUCUGgGGGCU-CU----ACCCGuCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72539 | 0.81 | 0.142088 |
Target: 5'- -uGGGCCCCCGGGAggGGGUAGGgGGCc -3' miRNA: 3'- ucUCUGGGGGCUCUa-CCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72324 | 0.67 | 0.784157 |
Target: 5'- --cGAUCgCCCGGacguacGGUGGGCGGG-AGCc -3' miRNA: 3'- ucuCUGG-GGGCU------CUACCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72183 | 0.68 | 0.717892 |
Target: 5'- --uGGCCCCCuaGGGAUGGGgcuguuCAGGgacGGCg -3' miRNA: 3'- ucuCUGGGGG--CUCUACCC------GUCCa--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 70287 | 0.71 | 0.547976 |
Target: 5'- --cGcCCCCCGAGGUGGGCAcc-AGCc -3' miRNA: 3'- ucuCuGGGGGCUCUACCCGUccaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 68938 | 0.71 | 0.542082 |
Target: 5'- uGAcGACCCCCGAGcgggGGGCuguGGUcccgccgccccuguuGGCg -3' miRNA: 3'- uCU-CUGGGGGCUCua--CCCGu--CCA---------------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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