miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 23525 0.71 0.557843
Target:  5'- cGAGGgCCCCGAcccccUGGGCGGcUGGCg -3'
miRNA:   3'- uCUCUgGGGGCUcu---ACCCGUCcAUCG- -5'
5537 3' -58.3 NC_001806.1 + 24993 0.7 0.58772
Target:  5'- cGGGGugCUguaacgggCCGGGAcgGGGCGGGgcGCu -3'
miRNA:   3'- -UCUCugGG--------GGCUCUa-CCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 64431 0.7 0.58772
Target:  5'- aGGAGGCCuCCCGGGuccGGauccGCAGGU-GCa -3'
miRNA:   3'- -UCUCUGG-GGGCUCua-CC----CGUCCAuCG- -5'
5537 3' -58.3 NC_001806.1 + 9786 0.7 0.59775
Target:  5'- gAGGGGCCCCgaCGugcGGGUGGGUGGGcucGGCc -3'
miRNA:   3'- -UCUCUGGGG--GC---UCUACCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 81476 0.7 0.59775
Target:  5'- uGGGugCCCUGGG--GGuGCGGGUGGUu -3'
miRNA:   3'- uCUCugGGGGCUCuaCC-CGUCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 79046 0.7 0.607804
Target:  5'- cGAGGCCaCCGAGGagcucccguuUGuGGCGGGcGGCg -3'
miRNA:   3'- uCUCUGGgGGCUCU----------AC-CCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 136968 0.7 0.607804
Target:  5'- uGGGGGCCCgCGAGcGUGGuGCGGucaUGGCg -3'
miRNA:   3'- -UCUCUGGGgGCUC-UACC-CGUCc--AUCG- -5'
5537 3' -58.3 NC_001806.1 + 150708 0.69 0.628968
Target:  5'- ---cGCCCCCGAGGcggcccgcccugugaGGGCGGGcUGGCu -3'
miRNA:   3'- ucucUGGGGGCUCUa--------------CCCGUCC-AUCG- -5'
5537 3' -58.3 NC_001806.1 + 13652 0.69 0.638045
Target:  5'- -cGGACCCCCG-GA-GGGUcGGUcAGCu -3'
miRNA:   3'- ucUCUGGGGGCuCUaCCCGuCCA-UCG- -5'
5537 3' -58.3 NC_001806.1 + 110103 0.69 0.647119
Target:  5'- cAGAGGCCCCCuacggugGAuGUGGGCguGGGUAu- -3'
miRNA:   3'- -UCUCUGGGGG-------CUcUACCCG--UCCAUcg -5'
5537 3' -58.3 NC_001806.1 + 46182 0.69 0.648126
Target:  5'- cGGGcCCCCCGAacccaGCGGGUGGCg -3'
miRNA:   3'- uCUCuGGGGGCUcuaccCGUCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 90994 0.69 0.648126
Target:  5'- -aAGACCCCgCGGGgcGGGCGcgacGGcGGCg -3'
miRNA:   3'- ucUCUGGGG-GCUCuaCCCGU----CCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 19476 0.69 0.658195
Target:  5'- -cAGACUCCgaUGAGAggGGGCGGGaagGGCg -3'
miRNA:   3'- ucUCUGGGG--GCUCUa-CCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 55328 0.69 0.658195
Target:  5'- aGGAGuCCCCCGGGugGGGC-GGUGa- -3'
miRNA:   3'- -UCUCuGGGGGCUCuaCCCGuCCAUcg -5'
5537 3' -58.3 NC_001806.1 + 93898 0.69 0.66724
Target:  5'- gGGAGGCCgCCCcgaaGAGGgggaccccgGGGCucagccagacgccGGGUAGCg -3'
miRNA:   3'- -UCUCUGG-GGG----CUCUa--------CCCG-------------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 38526 0.69 0.668244
Target:  5'- cGGAuauGGCCUCUGGuGGUGGcGCAccGGUAGCg -3'
miRNA:   3'- -UCU---CUGGGGGCU-CUACC-CGU--CCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 96378 0.68 0.678264
Target:  5'- cAGGGcGCCCCCGcGcggGGGCGccGGUGGUu -3'
miRNA:   3'- -UCUC-UGGGGGCuCua-CCCGU--CCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 21198 0.68 0.678264
Target:  5'- gGGGGGCCCUCGGGugGGGCgcggagacggAGGagGGCg -3'
miRNA:   3'- -UCUCUGGGGGCUCuaCCCG----------UCCa-UCG- -5'
5537 3' -58.3 NC_001806.1 + 6072 0.68 0.678264
Target:  5'- --cGGCCCCgGGGgcGGGCccGGGcGGCg -3'
miRNA:   3'- ucuCUGGGGgCUCuaCCCG--UCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 42387 0.68 0.687251
Target:  5'- cGuGGCCCCCGcgccccccAGAcgcUGGGCcugaagcAGGUAGUa -3'
miRNA:   3'- uCuCUGGGGGC--------UCU---ACCCG-------UCCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.