miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 82490 0.67 0.774098
Target:  5'- cGAGACCCUCGAa---GGCgucaccuGGGUGGCc -3'
miRNA:   3'- uCUCUGGGGGCUcuacCCG-------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 10367 0.67 0.765756
Target:  5'- cGGGGGCgcugggccaagaCCUCGGGG-GGGCGGGgggaGGCg -3'
miRNA:   3'- -UCUCUG------------GGGGCUCUaCCCGUCCa---UCG- -5'
5537 3' -58.3 NC_001806.1 + 95390 0.67 0.765756
Target:  5'- gGGAG-CUCCCGg---GGGCGGG-GGCg -3'
miRNA:   3'- -UCUCuGGGGGCucuaCCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 151742 0.67 0.756379
Target:  5'- --cGACCCCCGGGGgguguguuuUGGGgGGGgcccguuuucGGCg -3'
miRNA:   3'- ucuCUGGGGGCUCU---------ACCCgUCCa---------UCG- -5'
5537 3' -58.3 NC_001806.1 + 144820 0.67 0.756379
Target:  5'- gAGGGGCCCCCGAccgcGGCGGuccgGGCc -3'
miRNA:   3'- -UCUCUGGGGGCUcuacCCGUCca--UCG- -5'
5537 3' -58.3 NC_001806.1 + 32 0.67 0.756379
Target:  5'- --cGACCCCCGGGGgguguguuuUGGGgGGGgcccguuuucGGCg -3'
miRNA:   3'- ucuCUGGGGGCUCU---------ACCCgUCCa---------UCG- -5'
5537 3' -58.3 NC_001806.1 + 43483 0.67 0.746895
Target:  5'- cGAGGCCCCCacGAucGAcgGGGCc-GUGGCg -3'
miRNA:   3'- uCUCUGGGGG--CU--CUa-CCCGucCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 66803 0.67 0.746895
Target:  5'- gGGAgGAUCacggCCGAGcgGGGCcggcccGGGUGGCc -3'
miRNA:   3'- -UCU-CUGGg---GGCUCuaCCCG------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 112055 0.67 0.746895
Target:  5'- gGGAGGCCCU--GGAcGGGaCGGGUaucGGCg -3'
miRNA:   3'- -UCUCUGGGGgcUCUaCCC-GUCCA---UCG- -5'
5537 3' -58.3 NC_001806.1 + 31348 0.67 0.746895
Target:  5'- aAGGGACgCCCCccguguuugugGGGAgGGGgGGGUcgGGCg -3'
miRNA:   3'- -UCUCUG-GGGG-----------CUCUaCCCgUCCA--UCG- -5'
5537 3' -58.3 NC_001806.1 + 140708 0.67 0.746895
Target:  5'- uGGAacGCCCCCGucuguGGUGGcGCGGGgcGUu -3'
miRNA:   3'- -UCUc-UGGGGGCu----CUACC-CGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 113394 0.68 0.727643
Target:  5'- cGGGACgCCCGGGGccUGGaGCuggGGGUGGg -3'
miRNA:   3'- uCUCUGgGGGCUCU--ACC-CG---UCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 99755 0.68 0.727643
Target:  5'- --cGGCCUCCGGGGgacaaaGGGCcGGGUGGg -3'
miRNA:   3'- ucuCUGGGGGCUCUa-----CCCG-UCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 86014 0.68 0.727643
Target:  5'- cGGGGGCgCUuggCCGGGGaGGGCAGGgccGCg -3'
miRNA:   3'- -UCUCUG-GG---GGCUCUaCCCGUCCau-CG- -5'
5537 3' -58.3 NC_001806.1 + 63915 0.68 0.727643
Target:  5'- cGAuGCCCCCGuuGcGGGCgAGGaUGGCa -3'
miRNA:   3'- uCUcUGGGGGCucUaCCCG-UCC-AUCG- -5'
5537 3' -58.3 NC_001806.1 + 28288 0.68 0.717892
Target:  5'- gGGGGACCCCCacucauacacggGAGccGGGCgccauguuGGGgcGCc -3'
miRNA:   3'- -UCUCUGGGGG------------CUCuaCCCG--------UCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 72183 0.68 0.717892
Target:  5'- --uGGCCCCCuaGGGAUGGGgcuguuCAGGgacGGCg -3'
miRNA:   3'- ucuCUGGGGG--CUCUACCC------GUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 33985 0.68 0.717892
Target:  5'- cGGGGGUCgCCGGGGcagGGGCGGGggcgugGGCg -3'
miRNA:   3'- -UCUCUGGgGGCUCUa--CCCGUCCa-----UCG- -5'
5537 3' -58.3 NC_001806.1 + 40530 0.68 0.714953
Target:  5'- -cGGAUCuCCCGGGGggaagcgagauaggUGGGCGGGgcGUg -3'
miRNA:   3'- ucUCUGG-GGGCUCU--------------ACCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 72694 0.68 0.70807
Target:  5'- -cGGGCgCCCGAcGAuguaUGGGC-GGUGGCc -3'
miRNA:   3'- ucUCUGgGGGCU-CU----ACCCGuCCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.