miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 151742 0.67 0.756379
Target:  5'- --cGACCCCCGGGGgguguguuuUGGGgGGGgcccguuuucGGCg -3'
miRNA:   3'- ucuCUGGGGGCUCU---------ACCCgUCCa---------UCG- -5'
5537 3' -58.3 NC_001806.1 + 151431 0.72 0.45317
Target:  5'- cGGGGGCCCaCCGGcGggGGGCGGcGgcggGGCg -3'
miRNA:   3'- -UCUCUGGG-GGCU-CuaCCCGUC-Ca---UCG- -5'
5537 3' -58.3 NC_001806.1 + 150708 0.69 0.628968
Target:  5'- ---cGCCCCCGAGGcggcccgcccugugaGGGCGGGcUGGCu -3'
miRNA:   3'- ucucUGGGGGCUCUa--------------CCCGUCC-AUCG- -5'
5537 3' -58.3 NC_001806.1 + 148192 0.68 0.698186
Target:  5'- cGGGGCgUCCGGcGggGGGCGGGcGGUa -3'
miRNA:   3'- uCUCUGgGGGCU-CuaCCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 148138 0.66 0.827691
Target:  5'- uGAGACgCCCCGcccgucacGggGGGCGcGGcGGCg -3'
miRNA:   3'- uCUCUG-GGGGCu-------CuaCCCGU-CCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 147660 0.67 0.787775
Target:  5'- cGGGGCgggcggccggcuccgCCCCGGGGgccgGGGCGcGGgGGCg -3'
miRNA:   3'- uCUCUG---------------GGGGCUCUa---CCCGU-CCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 147006 1.12 0.001163
Target:  5'- uAGAGACCCCCGAGAUGGGCAGGUAGCg -3'
miRNA:   3'- -UCUCUGGGGGCUCUACCCGUCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 146922 0.67 0.775019
Target:  5'- cGAuGuuCCCCGucuccauguccaGGAUGGGCAGGcAGUc -3'
miRNA:   3'- uCU-CugGGGGC------------UCUACCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 144820 0.67 0.756379
Target:  5'- gAGGGGCCCCCGAccgcGGCGGuccgGGCc -3'
miRNA:   3'- -UCUCUGGGGGCUcuacCCGUCca--UCG- -5'
5537 3' -58.3 NC_001806.1 + 140708 0.67 0.746895
Target:  5'- uGGAacGCCCCCGucuguGGUGGcGCGGGgcGUu -3'
miRNA:   3'- -UCUc-UGGGGGCu----CUACC-CGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 136968 0.7 0.607804
Target:  5'- uGGGGGCCCgCGAGcGUGGuGCGGucaUGGCg -3'
miRNA:   3'- -UCUCUGGGgGCUC-UACC-CGUCc--AUCG- -5'
5537 3' -58.3 NC_001806.1 + 132331 0.68 0.688248
Target:  5'- cGGGGACCUggUCGAGGUGuGCgAGGUGGg -3'
miRNA:   3'- -UCUCUGGG--GGCUCUACcCG-UCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 130499 0.66 0.819299
Target:  5'- -cAGGCCgCCGAGAcGGaGgAGGUGGg -3'
miRNA:   3'- ucUCUGGgGGCUCUaCC-CgUCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 123189 0.66 0.802026
Target:  5'- cAGAGcacCCCCCGGGucgcccGCAgGGUGGCg -3'
miRNA:   3'- -UCUCu--GGGGGCUCuacc--CGU-CCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 117059 0.67 0.775019
Target:  5'- -uAGACCCaCGGGG-GGGUGGGggugGGCa -3'
miRNA:   3'- ucUCUGGGgGCUCUaCCCGUCCa---UCG- -5'
5537 3' -58.3 NC_001806.1 + 113746 0.67 0.784157
Target:  5'- --uGACCggCCCgGAGcUGGGCGGGcagGGCa -3'
miRNA:   3'- ucuCUGG--GGG-CUCuACCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 113394 0.68 0.727643
Target:  5'- cGGGACgCCCGGGGccUGGaGCuggGGGUGGg -3'
miRNA:   3'- uCUCUGgGGGCUCU--ACC-CG---UCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 112055 0.67 0.746895
Target:  5'- gGGAGGCCCU--GGAcGGGaCGGGUaucGGCg -3'
miRNA:   3'- -UCUCUGGGGgcUCUaCCC-GUCCA---UCG- -5'
5537 3' -58.3 NC_001806.1 + 111197 0.67 0.781429
Target:  5'- -cGGGCCCUgGGGAUagccugcgcggccgGGGCcucgauguGGGUGGCg -3'
miRNA:   3'- ucUCUGGGGgCUCUA--------------CCCG--------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 110103 0.69 0.647119
Target:  5'- cAGAGGCCCCCuacggugGAuGUGGGCguGGGUAu- -3'
miRNA:   3'- -UCUCUGGGGG-------CUcUACCCG--UCCAUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.