miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 64431 0.7 0.58772
Target:  5'- aGGAGGCCuCCCGGGuccGGauccGCAGGU-GCa -3'
miRNA:   3'- -UCUCUGG-GGGCUCua-CC----CGUCCAuCG- -5'
5537 3' -58.3 NC_001806.1 + 65302 0.66 0.81845
Target:  5'- gGGGGGCCCCCaagggccucggugGGGAcgucggccgucUGGGUAccGGUAGa -3'
miRNA:   3'- -UCUCUGGGGG-------------CUCU-----------ACCCGU--CCAUCg -5'
5537 3' -58.3 NC_001806.1 + 66803 0.67 0.746895
Target:  5'- gGGAgGAUCacggCCGAGcgGGGCcggcccGGGUGGCc -3'
miRNA:   3'- -UCU-CUGGg---GGCUCuaCCCG------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 68938 0.71 0.542082
Target:  5'- uGAcGACCCCCGAGcgggGGGCuguGGUcccgccgccccuguuGGCg -3'
miRNA:   3'- uCU-CUGGGGGCUCua--CCCGu--CCA---------------UCG- -5'
5537 3' -58.3 NC_001806.1 + 70287 0.71 0.547976
Target:  5'- --cGcCCCCCGAGGUGGGCAcc-AGCc -3'
miRNA:   3'- ucuCuGGGGGCUCUACCCGUccaUCG- -5'
5537 3' -58.3 NC_001806.1 + 72183 0.68 0.717892
Target:  5'- --uGGCCCCCuaGGGAUGGGgcuguuCAGGgacGGCg -3'
miRNA:   3'- ucuCUGGGGG--CUCUACCC------GUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 72324 0.67 0.784157
Target:  5'- --cGAUCgCCCGGacguacGGUGGGCGGG-AGCc -3'
miRNA:   3'- ucuCUGG-GGGCU------CUACCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 72539 0.81 0.142088
Target:  5'- -uGGGCCCCCGGGAggGGGUAGGgGGCc -3'
miRNA:   3'- ucUCUGGGGGCUCUa-CCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 72694 0.68 0.70807
Target:  5'- -cGGGCgCCCGAcGAuguaUGGGC-GGUGGCc -3'
miRNA:   3'- ucUCUGgGGGCU-CU----ACCCGuCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 72852 0.66 0.819299
Target:  5'- cGAGACaugcggguCCUgGAGAUGGGCGucgucccgguuGGUcGGCa -3'
miRNA:   3'- uCUCUG--------GGGgCUCUACCCGU-----------CCA-UCG- -5'
5537 3' -58.3 NC_001806.1 + 79046 0.7 0.607804
Target:  5'- cGAGGCCaCCGAGGagcucccguuUGuGGCGGGcGGCg -3'
miRNA:   3'- uCUCUGGgGGCUCU----------AC-CCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 81476 0.7 0.59775
Target:  5'- uGGGugCCCUGGG--GGuGCGGGUGGUu -3'
miRNA:   3'- uCUCugGGGGCUCuaCC-CGUCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 82490 0.67 0.774098
Target:  5'- cGAGACCCUCGAa---GGCgucaccuGGGUGGCc -3'
miRNA:   3'- uCUCUGGGGGCUcuacCCG-------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 83798 0.71 0.538164
Target:  5'- --uGGCCUCCGGGGgcgaggaggGGGCGGGgucGGCg -3'
miRNA:   3'- ucuCUGGGGGCUCUa--------CCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 84413 0.66 0.835911
Target:  5'- cGAGGCugaCCCCGAGAcgcagcccgGGGaCGGG-GGCc -3'
miRNA:   3'- uCUCUG---GGGGCUCUa--------CCC-GUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 86014 0.68 0.727643
Target:  5'- cGGGGGCgCUuggCCGGGGaGGGCAGGgccGCg -3'
miRNA:   3'- -UCUCUG-GG---GGCUCUaCCCGUCCau-CG- -5'
5537 3' -58.3 NC_001806.1 + 90994 0.69 0.648126
Target:  5'- -aAGACCCCgCGGGgcGGGCGcgacGGcGGCg -3'
miRNA:   3'- ucUCUGGGG-GCUCuaCCCGU----CCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 93275 0.67 0.775019
Target:  5'- cGGGGcauuAUCUCCGAGGgcgGGGCGGccgucgccaGUAGCg -3'
miRNA:   3'- -UCUC----UGGGGGCUCUa--CCCGUC---------CAUCG- -5'
5537 3' -58.3 NC_001806.1 + 93898 0.69 0.66724
Target:  5'- gGGAGGCCgCCCcgaaGAGGgggaccccgGGGCucagccagacgccGGGUAGCg -3'
miRNA:   3'- -UCUCUGG-GGG----CUCUa--------CCCG-------------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 95390 0.67 0.765756
Target:  5'- gGGAG-CUCCCGg---GGGCGGG-GGCg -3'
miRNA:   3'- -UCUCuGGGGGCucuaCCCGUCCaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.