Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 3' | -58.3 | NC_001806.1 | + | 20718 | 0.74 | 0.360112 |
Target: 5'- -uGGGCCCgCCGGGG-GGGCGGGgGGCc -3' miRNA: 3'- ucUCUGGG-GGCUCUaCCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 19907 | 0.75 | 0.320284 |
Target: 5'- cGGAGGCCCCCGGGGUGcGUccccuguguuucguGGGUGGg -3' miRNA: 3'- -UCUCUGGGGGCUCUACcCG--------------UCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 50795 | 0.78 | 0.222006 |
Target: 5'- --cGGCCCCCGAGGUGGGCAcGUAc- -3' miRNA: 3'- ucuCUGGGGGCUCUACCCGUcCAUcg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72539 | 0.81 | 0.142088 |
Target: 5'- -uGGGCCCCCGGGAggGGGUAGGgGGCc -3' miRNA: 3'- ucUCUGGGGGCUCUa-CCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 34363 | 0.83 | 0.112851 |
Target: 5'- gGGGGACCggggcuggguauCCCGAGGUGGGUGGGUGGg -3' miRNA: 3'- -UCUCUGG------------GGGCUCUACCCGUCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 28710 | 0.71 | 0.535232 |
Target: 5'- uGGGACCCCCGAcuccggugcgucugGA-GGGCGGG-AGa -3' miRNA: 3'- uCUCUGGGGGCU--------------CUaCCCGUCCaUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 83798 | 0.71 | 0.538164 |
Target: 5'- --uGGCCUCCGGGGgcgaggaggGGGCGGGgucGGCg -3' miRNA: 3'- ucuCUGGGGGCUCUa--------CCCGUCCa--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 13652 | 0.69 | 0.638045 |
Target: 5'- -cGGACCCCCG-GA-GGGUcGGUcAGCu -3' miRNA: 3'- ucUCUGGGGGCuCUaCCCGuCCA-UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 150708 | 0.69 | 0.628968 |
Target: 5'- ---cGCCCCCGAGGcggcccgcccugugaGGGCGGGcUGGCu -3' miRNA: 3'- ucucUGGGGGCUCUa--------------CCCGUCC-AUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 79046 | 0.7 | 0.607804 |
Target: 5'- cGAGGCCaCCGAGGagcucccguuUGuGGCGGGcGGCg -3' miRNA: 3'- uCUCUGGgGGCUCU----------AC-CCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 136968 | 0.7 | 0.607804 |
Target: 5'- uGGGGGCCCgCGAGcGUGGuGCGGucaUGGCg -3' miRNA: 3'- -UCUCUGGGgGCUC-UACC-CGUCc--AUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 81476 | 0.7 | 0.59775 |
Target: 5'- uGGGugCCCUGGG--GGuGCGGGUGGUu -3' miRNA: 3'- uCUCugGGGGCUCuaCC-CGUCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 9786 | 0.7 | 0.59775 |
Target: 5'- gAGGGGCCCCgaCGugcGGGUGGGUGGGcucGGCc -3' miRNA: 3'- -UCUCUGGGG--GC---UCUACCCGUCCa--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 64431 | 0.7 | 0.58772 |
Target: 5'- aGGAGGCCuCCCGGGuccGGauccGCAGGU-GCa -3' miRNA: 3'- -UCUCUGG-GGGCUCua-CC----CGUCCAuCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 24993 | 0.7 | 0.58772 |
Target: 5'- cGGGGugCUguaacgggCCGGGAcgGGGCGGGgcGCu -3' miRNA: 3'- -UCUCugGG--------GGCUCUa-CCCGUCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 48292 | 0.71 | 0.557843 |
Target: 5'- cGAcGCCCCCGaAGAggcgGGGCuGGcGGCu -3' miRNA: 3'- uCUcUGGGGGC-UCUa---CCCGuCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 23525 | 0.71 | 0.557843 |
Target: 5'- cGAGGgCCCCGAcccccUGGGCGGcUGGCg -3' miRNA: 3'- uCUCUgGGGGCUcu---ACCCGUCcAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 59103 | 0.71 | 0.556854 |
Target: 5'- uGGGAacaCCCCacagugaCGAGGUGGGCuucGGUGGUg -3' miRNA: 3'- uCUCU---GGGG-------GCUCUACCCGu--CCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 70287 | 0.71 | 0.547976 |
Target: 5'- --cGcCCCCCGAGGUGGGCAcc-AGCc -3' miRNA: 3'- ucuCuGGGGGCUCUACCCGUccaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 68938 | 0.71 | 0.542082 |
Target: 5'- uGAcGACCCCCGAGcgggGGGCuguGGUcccgccgccccuguuGGCg -3' miRNA: 3'- uCU-CUGGGGGCUCua--CCCGu--CCA---------------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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