miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 37949 0.66 0.524249
Target:  5'- cCCGCCC-CGGGG-CGGggucCCCCaGGGu-- -3'
miRNA:   3'- -GGCGGGcGCCCCuGCC----GGGG-CCUuca -5'
5537 5' -66 NC_001806.1 + 132837 0.74 0.155084
Target:  5'- cCCGCCCGCGGccgucgggcccgucuGGACGGCgcgguuuugcuucCCCGGAc-- -3'
miRNA:   3'- -GGCGGGCGCC---------------CCUGCCG-------------GGGCCUuca -5'
5537 5' -66 NC_001806.1 + 147677 0.86 0.022202
Target:  5'- uCCGCCCcgggggccggggcGCGGGGGCgGGCCCCGGAGGc -3'
miRNA:   3'- -GGCGGG-------------CGCCCCUG-CCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 73985 0.78 0.090613
Target:  5'- cCCGCCCcgGCcGGGGCGGCCCCGcaGggGg -3'
miRNA:   3'- -GGCGGG--CGcCCCUGCCGGGGC--CuuCa -5'
5537 5' -66 NC_001806.1 + 4432 0.77 0.095159
Target:  5'- -gGCCCggGCGGGGGCGGCguccgCCCGGggGc -3'
miRNA:   3'- ggCGGG--CGCCCCUGCCG-----GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 135062 0.77 0.097512
Target:  5'- aCCGgcCCCGCGGGGACGcGCCgggCCGGAAa- -3'
miRNA:   3'- -GGC--GGGCGCCCCUGC-CGG---GGCCUUca -5'
5537 5' -66 NC_001806.1 + 6070 0.77 0.107486
Target:  5'- gCCgGCCC-CGGGGGCGGgCCCGGgcGg -3'
miRNA:   3'- -GG-CGGGcGCCCCUGCCgGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 41818 0.77 0.107486
Target:  5'- cCCGCaauaCGCGGGGGCgggcgucagGGCCCCGGgcGc -3'
miRNA:   3'- -GGCGg---GCGCCCCUG---------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 67982 0.75 0.143082
Target:  5'- aCGCCUGCGGGGguccuggAgGGCCgCGGggGa -3'
miRNA:   3'- gGCGGGCGCCCC-------UgCCGGgGCCuuCa -5'
5537 5' -66 NC_001806.1 + 147500 0.75 0.146869
Target:  5'- gCGCCgGaGGGGGCGGCgCCgCGGGAGg -3'
miRNA:   3'- gGCGGgCgCCCCUGCCG-GG-GCCUUCa -5'
5537 5' -66 NC_001806.1 + 115214 0.75 0.150391
Target:  5'- uCCGCCgGCccugcaacccccGGGGACGcGCCgCCGGggGc -3'
miRNA:   3'- -GGCGGgCG------------CCCCUGC-CGG-GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 147040 1.07 0.000648
Target:  5'- gCCGCCCGCGGGGACGGCCCCGGAAGUc -3'
miRNA:   3'- -GGCGGGCGCCCCUGCCGGGGCCUUCA- -5'
5537 5' -66 NC_001806.1 + 93891 0.74 0.157666
Target:  5'- -gGCCCGCGGGaGGCcGCCCCGaaGAGGg -3'
miRNA:   3'- ggCGGGCGCCC-CUGcCGGGGC--CUUCa -5'
5537 5' -66 NC_001806.1 + 4393 0.74 0.157666
Target:  5'- gCCGCCCGgggcuUGGGcGCGGCCUCGGAGa- -3'
miRNA:   3'- -GGCGGGC-----GCCCcUGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 134229 0.74 0.161421
Target:  5'- -gGCCaCGCagucggagcggGGGGGCGGCCCCGGcAGc -3'
miRNA:   3'- ggCGG-GCG-----------CCCCUGCCGGGGCCuUCa -5'
5537 5' -66 NC_001806.1 + 133229 0.74 0.16487
Target:  5'- aCGCCCgGCGGGccaucgaGACGGCCgUGGGAGc -3'
miRNA:   3'- gGCGGG-CGCCC-------CUGCCGGgGCCUUCa -5'
5537 5' -66 NC_001806.1 + 4711 0.74 0.165257
Target:  5'- gCGCCgcguaGCGGGGccucccguucGCGGCCCCGGGccGGg -3'
miRNA:   3'- gGCGGg----CGCCCC----------UGCCGGGGCCU--UCa -5'
5537 5' -66 NC_001806.1 + 106788 0.74 0.165257
Target:  5'- uCCG-CCGCGuGGGCGGCuaCCCGGAGGa -3'
miRNA:   3'- -GGCgGGCGCcCCUGCCG--GGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 29962 0.74 0.169175
Target:  5'- gCCGCggcgCCGCGGGGGgcgucUGGCCCCuccGGggGg -3'
miRNA:   3'- -GGCG----GGCGCCCCU-----GCCGGGG---CCuuCa -5'
5537 5' -66 NC_001806.1 + 3327 0.73 0.17726
Target:  5'- -gGCCCGCGGGucccucCGGCCgCGGggGg -3'
miRNA:   3'- ggCGGGCGCCCcu----GCCGGgGCCuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.