miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 6659 0.69 0.337172
Target:  5'- cCUGCUCGuCGGGggggagcaugucGugGGCCCUGGAAa- -3'
miRNA:   3'- -GGCGGGC-GCCC------------CugCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 9945 0.69 0.350679
Target:  5'- -gGCCggaguguUGUGGGGACGcGUCCCGGAAc- -3'
miRNA:   3'- ggCGG-------GCGCCCCUGC-CGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 11358 0.66 0.500839
Target:  5'- gCCGCCCcaGCGGGcuccgacucuucggcGAUGGCCgucaGGGAGg -3'
miRNA:   3'- -GGCGGG--CGCCC---------------CUGCCGGgg--CCUUCa -5'
5537 5' -66 NC_001806.1 + 11682 0.66 0.521526
Target:  5'- gUCGCUCGCGuGGcauuaGAUGGggguucgugguugaCCCCGGGAGg -3'
miRNA:   3'- -GGCGGGCGC-CC-----CUGCC--------------GGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 17580 0.67 0.453793
Target:  5'- cCUGUuuGCGGaGGACaGCCCCuuGGAGa- -3'
miRNA:   3'- -GGCGggCGCC-CCUGcCGGGG--CCUUca -5'
5537 5' -66 NC_001806.1 + 18132 0.68 0.381113
Target:  5'- gCCGUUCGCGGcGaACGGCCCCGa---- -3'
miRNA:   3'- -GGCGGGCGCC-CcUGCCGGGGCcuuca -5'
5537 5' -66 NC_001806.1 + 18883 0.68 0.404472
Target:  5'- aCGUgCGCGGGGccagACGGgCUCGGcAGUa -3'
miRNA:   3'- gGCGgGCGCCCC----UGCCgGGGCCuUCA- -5'
5537 5' -66 NC_001806.1 + 20178 0.66 0.470948
Target:  5'- cCCGCCCcCGGGGcCGGCg-CGGAGu- -3'
miRNA:   3'- -GGCGGGcGCCCCuGCCGggGCCUUca -5'
5537 5' -66 NC_001806.1 + 20319 0.71 0.243949
Target:  5'- cCCGCCCGCcggccaauggGGGGGCGGCaaggCGGgcGg -3'
miRNA:   3'- -GGCGGGCG----------CCCCUGCCGgg--GCCuuCa -5'
5537 5' -66 NC_001806.1 + 20597 0.68 0.388799
Target:  5'- cCCGCCCauggcagauggcGCGGauGGGCGGggCCGGggGUu -3'
miRNA:   3'- -GGCGGG------------CGCC--CCUGCCggGGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 20707 0.69 0.3514
Target:  5'- uCCGUU--CGGGGugGGCCcgCCGGggGg -3'
miRNA:   3'- -GGCGGgcGCCCCugCCGG--GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 21282 0.67 0.445344
Target:  5'- aCGCCCgGCGggacGGGAgGGCCCCcgcGGcGGg -3'
miRNA:   3'- gGCGGG-CGC----CCCUgCCGGGG---CCuUCa -5'
5537 5' -66 NC_001806.1 + 21497 0.67 0.462329
Target:  5'- gCCGCCgGCGaccGGGcccCGGCCCggggccgcgaaCGGGAGg -3'
miRNA:   3'- -GGCGGgCGC---CCCu--GCCGGG-----------GCCUUCa -5'
5537 5' -66 NC_001806.1 + 22074 0.67 0.428715
Target:  5'- cCCGCCCcCGGGGcgggugcuguACGGCggCCUGGgcGa -3'
miRNA:   3'- -GGCGGGcGCCCC----------UGCCG--GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 22115 0.68 0.396586
Target:  5'- gCCGCCCGggccucugGGGGGC-GCCCgaggCGGAGGa -3'
miRNA:   3'- -GGCGGGCg-------CCCCUGcCGGG----GCCUUCa -5'
5537 5' -66 NC_001806.1 + 22571 0.66 0.497278
Target:  5'- -gGgCCGCGGGGA--GCCCCGGc--- -3'
miRNA:   3'- ggCgGGCGCCCCUgcCGGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 22651 0.71 0.272404
Target:  5'- gUGCCCGCcGGGuACGGCgCCGcGggGa -3'
miRNA:   3'- gGCGGGCGcCCC-UGCCGgGGC-CuuCa -5'
5537 5' -66 NC_001806.1 + 23318 0.67 0.436984
Target:  5'- gCCGCCCGgaGGcGGCGGCCCgCGacccccGAAGa -3'
miRNA:   3'- -GGCGGGCg-CCcCUGCCGGG-GC------CUUCa -5'
5537 5' -66 NC_001806.1 + 23586 0.73 0.185687
Target:  5'- gCGCCCGCGGccGCcGCCCUGGAGGc -3'
miRNA:   3'- gGCGGGCGCCccUGcCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 23937 0.66 0.479647
Target:  5'- gCCGgCgGCGGGGccugggGgGGCCgCCGGAguGGUc -3'
miRNA:   3'- -GGCgGgCGCCCC------UgCCGG-GGCCU--UCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.