miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 378 0.73 0.189593
Target:  5'- gCGCCCGCGGGG--GGCCCgGGcugccacAGGUg -3'
miRNA:   3'- gGCGGGCGCCCCugCCGGGgCC-------UUCA- -5'
5537 5' -66 NC_001806.1 + 2425 0.66 0.524249
Target:  5'- -gGCCCGaggcgcgcaGGGGgccaaagagGCGGCCCCcggcggccccguGGggGUg -3'
miRNA:   3'- ggCGGGCg--------CCCC---------UGCCGGGG------------CCuuCA- -5'
5537 5' -66 NC_001806.1 + 2501 0.7 0.282668
Target:  5'- gCCGCCgCacgcggccugggcgGCGGGGGCGGgCCCGGc--- -3'
miRNA:   3'- -GGCGG-G--------------CGCCCCUGCCgGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 2667 0.72 0.232755
Target:  5'- gCGgCCGCGGGcGCcgccguguggcugGGCCCCGGggGc -3'
miRNA:   3'- gGCgGGCGCCCcUG-------------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 2717 0.66 0.524249
Target:  5'- gCCGCCCa-GGGGGucggGGCCCuCGGcGGg -3'
miRNA:   3'- -GGCGGGcgCCCCUg---CCGGG-GCCuUCa -5'
5537 5' -66 NC_001806.1 + 2800 0.73 0.189593
Target:  5'- gCGCCgcgggcuggGCGGGGGCgggcucgGGCCCCGGggGc -3'
miRNA:   3'- gGCGGg--------CGCCCCUG-------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 3047 0.67 0.420538
Target:  5'- gCCGCCaGCaGGGGGCgcaGGCUCUGGuuGUc -3'
miRNA:   3'- -GGCGGgCG-CCCCUG---CCGGGGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 3087 0.69 0.323369
Target:  5'- -gGUCCGCGGcGGcgGCGGCCgCGGAGc- -3'
miRNA:   3'- ggCGGGCGCC-CC--UGCCGGgGCCUUca -5'
5537 5' -66 NC_001806.1 + 3129 0.68 0.412457
Target:  5'- cCCGCggcagCGCGGGGcccAgGGCCCCGGc--- -3'
miRNA:   3'- -GGCGg----GCGCCCC---UgCCGGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 3327 0.73 0.17726
Target:  5'- -gGCCCGCGGGucccucCGGCCgCGGggGg -3'
miRNA:   3'- ggCGGGCGCCCcu----GCCGGgGCCuuCa -5'
5537 5' -66 NC_001806.1 + 3535 0.66 0.470948
Target:  5'- gCCcCCCGCGGGGgagGCGGgCgCGGcGGa -3'
miRNA:   3'- -GGcGGGCGCCCC---UGCCgGgGCCuUCa -5'
5537 5' -66 NC_001806.1 + 4175 0.73 0.203604
Target:  5'- cCCGCCCcggggGCGGGGGCccGGCgCCGGGc-- -3'
miRNA:   3'- -GGCGGG-----CGCCCCUG--CCGgGGCCUuca -5'
5537 5' -66 NC_001806.1 + 4333 0.73 0.185257
Target:  5'- aCCGCCgCGCGGGcccggcggcgcucGauGCGGCCCgCGGAGGc -3'
miRNA:   3'- -GGCGG-GCGCCC-------------C--UGCCGGG-GCCUUCa -5'
5537 5' -66 NC_001806.1 + 4393 0.74 0.157666
Target:  5'- gCCGCCCGgggcuUGGGcGCGGCCUCGGAGa- -3'
miRNA:   3'- -GGCGGGC-----GCCCcUGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 4432 0.77 0.095159
Target:  5'- -gGCCCggGCGGGGGCGGCguccgCCCGGggGc -3'
miRNA:   3'- ggCGGG--CGCCCCUGCCG-----GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 4711 0.74 0.165257
Target:  5'- gCGCCgcguaGCGGGGccucccguucGCGGCCCCGGGccGGg -3'
miRNA:   3'- gGCGGg----CGCCCC----------UGCCGGGGCCU--UCa -5'
5537 5' -66 NC_001806.1 + 5098 0.66 0.515193
Target:  5'- gCgGCCCGuCGGuGG--GGCCCgGGGAGc -3'
miRNA:   3'- -GgCGGGC-GCC-CCugCCGGGgCCUUCa -5'
5537 5' -66 NC_001806.1 + 5948 0.71 0.260714
Target:  5'- aCCGCCCcaaGGGGGCggGGCCgCCGGGu-- -3'
miRNA:   3'- -GGCGGGcg-CCCCUG--CCGG-GGCCUuca -5'
5537 5' -66 NC_001806.1 + 6070 0.77 0.107486
Target:  5'- gCCgGCCC-CGGGGGCGGgCCCGGgcGg -3'
miRNA:   3'- -GG-CGGGcGCCCCUGCCgGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 6310 0.67 0.420538
Target:  5'- cCCGCCCaccccacccacGaaacacaGGGGACGcaCCCCGGggGc -3'
miRNA:   3'- -GGCGGG-----------Cg------CCCCUGCc-GGGGCCuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.