Results 41 - 60 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 5' | -66 | NC_001806.1 | + | 24520 | 0.68 | 0.388799 |
Target: 5'- gCUGCCgGCgcuggacggccGGGcGGCGGCCUCGGGGa- -3' miRNA: 3'- -GGCGGgCG-----------CCC-CUGCCGGGGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 25931 | 0.68 | 0.404472 |
Target: 5'- gCGCgCGCGGcGGGCgugggggcggGGCCgCGGGAGc -3' miRNA: 3'- gGCGgGCGCC-CCUG----------CCGGgGCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 26695 | 0.68 | 0.412457 |
Target: 5'- aCCGCCC--GGcGugGGCCCgGGggGc -3' miRNA: 3'- -GGCGGGcgCCcCugCCGGGgCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 27090 | 0.66 | 0.524249 |
Target: 5'- -gGCCCGCGGaGcCGGCCCgGcGAAc- -3' miRNA: 3'- ggCGGGCGCCcCuGCCGGGgC-CUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 27230 | 0.66 | 0.470948 |
Target: 5'- gCCaGCCCGCccucacagGGcGGGCcGCCUCGGggGc -3' miRNA: 3'- -GG-CGGGCG--------CC-CCUGcCGGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 27315 | 0.66 | 0.479647 |
Target: 5'- gCGUCCGCcgagucuucGGGGccCGGCCCauugggCGGGAGUu -3' miRNA: 3'- gGCGGGCG---------CCCCu-GCCGGG------GCCUUCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 28683 | 0.69 | 0.337172 |
Target: 5'- gCCGCCCGCcauauuugGGGGACG-CCgUGGGAc- -3' miRNA: 3'- -GGCGGGCG--------CCCCUGCcGGgGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 29115 | 0.73 | 0.203604 |
Target: 5'- gCCGCagggcguggaUGgGGGGGCGGUCUCGGggGg -3' miRNA: 3'- -GGCGg---------GCgCCCCUGCCGGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 29962 | 0.74 | 0.169175 |
Target: 5'- gCCGCggcgCCGCGGGGGgcgucUGGCCCCuccGGggGg -3' miRNA: 3'- -GGCG----GGCGCCCCU-----GCCGGGG---CCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 30255 | 0.66 | 0.506202 |
Target: 5'- gCCGCCUcCGGGGccCGGCCCCc----- -3' miRNA: 3'- -GGCGGGcGCCCCu-GCCGGGGccuuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 30733 | 0.68 | 0.412457 |
Target: 5'- aCC-CCCGCGGGGGCcGCCucuuccgccgCCGGGGc- -3' miRNA: 3'- -GGcGGGCGCCCCUGcCGG----------GGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 30784 | 0.72 | 0.223002 |
Target: 5'- uCCGCCUccucggGCGGGGcCGucgguGCCCUGGGAGg -3' miRNA: 3'- -GGCGGG------CGCCCCuGC-----CGGGGCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 30848 | 0.69 | 0.323369 |
Target: 5'- cCCGCgcugcuucugggCCGCGGGGGCcgaGGaagugugCCCGGAAGa -3' miRNA: 3'- -GGCG------------GGCGCCCCUG---CCg------GGGCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 31096 | 0.68 | 0.388799 |
Target: 5'- cCCGgCUGCGGGccGCGGuCCCCGGcuGg -3' miRNA: 3'- -GGCgGGCGCCCc-UGCC-GGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 33002 | 0.67 | 0.462329 |
Target: 5'- gCCGCCa-CGGGGGcCGGCCgUUGGcGGUa -3' miRNA: 3'- -GGCGGgcGCCCCU-GCCGG-GGCCuUCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 33133 | 0.66 | 0.524249 |
Target: 5'- aCCGCCgCGguCGGGGGCcccucGUCCCGGGc-- -3' miRNA: 3'- -GGCGG-GC--GCCCCUGc----CGGGGCCUuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 33350 | 0.68 | 0.395803 |
Target: 5'- gCCGCCCcggcuGCaGGGGggcccggagagccGCGGCaCCCGGAc-- -3' miRNA: 3'- -GGCGGG-----CG-CCCC-------------UGCCG-GGGCCUuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 34323 | 0.69 | 0.330218 |
Target: 5'- gCGCCgGaCGGGGcgcuggagauaACGGCCCCcGggGa -3' miRNA: 3'- gGCGGgC-GCCCC-----------UGCCGGGGcCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 34513 | 0.66 | 0.515193 |
Target: 5'- aCgGCCCGgGGGGugGGagCgCGGGccGGg -3' miRNA: 3'- -GgCGGGCgCCCCugCCg-GgGCCU--UCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 34770 | 0.71 | 0.260714 |
Target: 5'- -aGCCgGCGGGG-CGGUUCgGGggGg -3' miRNA: 3'- ggCGGgCGCCCCuGCCGGGgCCuuCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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