miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 6070 0.77 0.107486
Target:  5'- gCCgGCCC-CGGGGGCGGgCCCGGgcGg -3'
miRNA:   3'- -GG-CGGGcGCCCCUGCCgGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 135062 0.77 0.097512
Target:  5'- aCCGgcCCCGCGGGGACGcGCCgggCCGGAAa- -3'
miRNA:   3'- -GGC--GGGCGCCCCUGC-CGG---GGCCUUca -5'
5537 5' -66 NC_001806.1 + 4432 0.77 0.095159
Target:  5'- -gGCCCggGCGGGGGCGGCguccgCCCGGggGc -3'
miRNA:   3'- ggCGGG--CGCCCCUGCCG-----GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 73985 0.78 0.090613
Target:  5'- cCCGCCCcgGCcGGGGCGGCCCCGcaGggGg -3'
miRNA:   3'- -GGCGGG--CGcCCCUGCCGGGGC--CuuCa -5'
5537 5' -66 NC_001806.1 + 147677 0.86 0.022202
Target:  5'- uCCGCCCcgggggccggggcGCGGGGGCgGGCCCCGGAGGc -3'
miRNA:   3'- -GGCGGG-------------CGCCCCUG-CCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 133229 0.74 0.16487
Target:  5'- aCGCCCgGCGGGccaucgaGACGGCCgUGGGAGc -3'
miRNA:   3'- gGCGGG-CGCCC-------CUGCCGGgGCCUUCa -5'
5537 5' -66 NC_001806.1 + 4711 0.74 0.165257
Target:  5'- gCGCCgcguaGCGGGGccucccguucGCGGCCCCGGGccGGg -3'
miRNA:   3'- gGCGGg----CGCCCC----------UGCCGGGGCCU--UCa -5'
5537 5' -66 NC_001806.1 + 55526 0.72 0.212629
Target:  5'- -gGCCCGgGGGGuuuagugggGCGGCCCgacuuggCGGggGUg -3'
miRNA:   3'- ggCGGGCgCCCC---------UGCCGGG-------GCCuuCA- -5'
5537 5' -66 NC_001806.1 + 29115 0.73 0.203604
Target:  5'- gCCGCagggcguggaUGgGGGGGCGGUCUCGGggGg -3'
miRNA:   3'- -GGCGg---------GCgCCCCUGCCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 4175 0.73 0.203604
Target:  5'- cCCGCCCcggggGCGGGGGCccGGCgCCGGGc-- -3'
miRNA:   3'- -GGCGGG-----CGCCCCUG--CCGgGGCCUuca -5'
5537 5' -66 NC_001806.1 + 54866 0.73 0.203139
Target:  5'- -gGUCCGCGGGGggaccuggccgccGCaGCCUCGGAGGUc -3'
miRNA:   3'- ggCGGGCGCCCC-------------UGcCGGGGCCUUCA- -5'
5537 5' -66 NC_001806.1 + 2800 0.73 0.189593
Target:  5'- gCGCCgcgggcuggGCGGGGGCgggcucgGGCCCCGGggGc -3'
miRNA:   3'- gGCGGg--------CGCCCCUG-------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 378 0.73 0.189593
Target:  5'- gCGCCCGCGGGG--GGCCCgGGcugccacAGGUg -3'
miRNA:   3'- gGCGGGCGCCCCugCCGGGgCC-------UUCA- -5'
5537 5' -66 NC_001806.1 + 23586 0.73 0.185687
Target:  5'- gCGCCCGCGGccGCcGCCCUGGAGGc -3'
miRNA:   3'- gGCGGGCGCCccUGcCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 4333 0.73 0.185257
Target:  5'- aCCGCCgCGCGGGcccggcggcgcucGauGCGGCCCgCGGAGGc -3'
miRNA:   3'- -GGCGG-GCGCCC-------------C--UGCCGGG-GCCUUCa -5'
5537 5' -66 NC_001806.1 + 83253 0.73 0.18143
Target:  5'- -gGCCCGCGGGGggGCGGgCgaCGGAGGg -3'
miRNA:   3'- ggCGGGCGCCCC--UGCCgGg-GCCUUCa -5'
5537 5' -66 NC_001806.1 + 107036 0.73 0.17726
Target:  5'- gCCGCCCGCGGGGcCGcgggcuguGCCgCGGAuucuGUg -3'
miRNA:   3'- -GGCGGGCGCCCCuGC--------CGGgGCCUu---CA- -5'
5537 5' -66 NC_001806.1 + 3327 0.73 0.17726
Target:  5'- -gGCCCGCGGGucccucCGGCCgCGGggGg -3'
miRNA:   3'- ggCGGGCGCCCcu----GCCGGgGCCuuCa -5'
5537 5' -66 NC_001806.1 + 29962 0.74 0.169175
Target:  5'- gCCGCggcgCCGCGGGGGgcgucUGGCCCCuccGGggGg -3'
miRNA:   3'- -GGCG----GGCGCCCCU-----GCCGGGG---CCuuCa -5'
5537 5' -66 NC_001806.1 + 106788 0.74 0.165257
Target:  5'- uCCG-CCGCGuGGGCGGCuaCCCGGAGGa -3'
miRNA:   3'- -GGCgGGCGCcCCUGCCG--GGGCCUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.