miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 43577 0.71 0.255023
Target:  5'- aUGUCCGUGGGGGCGGCugacaaguCCgCGGAuGUg -3'
miRNA:   3'- gGCGGGCGCCCCUGCCG--------GG-GCCUuCA- -5'
5537 5' -66 NC_001806.1 + 109077 0.71 0.255023
Target:  5'- aCGCCCGCGGGGc---CCCCGcGGAGc -3'
miRNA:   3'- gGCGGGCGCCCCugccGGGGC-CUUCa -5'
5537 5' -66 NC_001806.1 + 34770 0.71 0.260714
Target:  5'- -aGCCgGCGGGG-CGGUUCgGGggGg -3'
miRNA:   3'- ggCGGgCGCCCCuGCCGGGgCCuuCa -5'
5537 5' -66 NC_001806.1 + 120878 0.71 0.260714
Target:  5'- gCCGCCUGguccccCGGGGACcuuGCCCCGGccGg -3'
miRNA:   3'- -GGCGGGC------GCCCCUGc--CGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 5948 0.71 0.260714
Target:  5'- aCCGCCCcaaGGGGGCggGGCCgCCGGGu-- -3'
miRNA:   3'- -GGCGGGcg-CCCCUG--CCGG-GGCCUuca -5'
5537 5' -66 NC_001806.1 + 56842 0.71 0.266507
Target:  5'- aCCG-CCGCGGccaGGGCGGCCgCGGcGGg -3'
miRNA:   3'- -GGCgGGCGCC---CCUGCCGGgGCCuUCa -5'
5537 5' -66 NC_001806.1 + 92913 0.71 0.272404
Target:  5'- -gGUCCGCGcagggcGGGGCGGgCCUGGAGGc -3'
miRNA:   3'- ggCGGGCGC------CCCUGCCgGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 22651 0.71 0.272404
Target:  5'- gUGCCCGCcGGGuACGGCgCCGcGggGa -3'
miRNA:   3'- gGCGGGCGcCCC-UGCCGgGGC-CuuCa -5'
5537 5' -66 NC_001806.1 + 2501 0.7 0.282668
Target:  5'- gCCGCCgCacgcggccugggcgGCGGGGGCGGgCCCGGc--- -3'
miRNA:   3'- -GGCGG-G--------------CGCCCCUGCCgGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 147230 0.7 0.284511
Target:  5'- gCC-CCCGCGGGGGucggGGCCgaGGAGGa -3'
miRNA:   3'- -GGcGGGCGCCCCUg---CCGGggCCUUCa -5'
5537 5' -66 NC_001806.1 + 112039 0.7 0.290722
Target:  5'- aUCGCCCugcucaCGGGGGaGGCCCUGGAcgGGa -3'
miRNA:   3'- -GGCGGGc-----GCCCCUgCCGGGGCCU--UCa -5'
5537 5' -66 NC_001806.1 + 37996 0.7 0.295132
Target:  5'- aCGCCgGCGGGGGucCGacaaaccaucggcaGCCCCGGGAc- -3'
miRNA:   3'- gGCGGgCGCCCCU--GC--------------CGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 144322 0.7 0.297039
Target:  5'- cCCGCCCGUGuGGGuaucCGGCCCCc----- -3'
miRNA:   3'- -GGCGGGCGC-CCCu---GCCGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 50776 0.7 0.297039
Target:  5'- gCGUuuGaCGGGGgauucACGGCCCCcGAGGUg -3'
miRNA:   3'- gGCGggC-GCCCC-----UGCCGGGGcCUUCA- -5'
5537 5' -66 NC_001806.1 + 66812 0.7 0.303462
Target:  5'- aCgGCCgaGCGGGGcCGGCCCgGGuGGc -3'
miRNA:   3'- -GgCGGg-CGCCCCuGCCGGGgCCuUCa -5'
5537 5' -66 NC_001806.1 + 72524 0.7 0.303462
Target:  5'- -aGCCCuGCGucGGcGugGGCCCCcGGGAGg -3'
miRNA:   3'- ggCGGG-CGC--CC-CugCCGGGG-CCUUCa -5'
5537 5' -66 NC_001806.1 + 50642 0.7 0.315958
Target:  5'- aCGCCCgggcguGCGGGGAcgcgcacCGGCgCCGGGAc- -3'
miRNA:   3'- gGCGGG------CGCCCCU-------GCCGgGGCCUUca -5'
5537 5' -66 NC_001806.1 + 151537 0.7 0.316627
Target:  5'- gCGCCCGUGGgcccGGGCGGCCgggggcggCGGggGc -3'
miRNA:   3'- gGCGGGCGCC----CCUGCCGGg-------GCCuuCa -5'
5537 5' -66 NC_001806.1 + 113838 0.7 0.316627
Target:  5'- aCGCCCugauGCGGcGcGCGGCCCUGGAc-- -3'
miRNA:   3'- gGCGGG----CGCC-CcUGCCGGGGCCUuca -5'
5537 5' -66 NC_001806.1 + 30848 0.69 0.323369
Target:  5'- cCCGCgcugcuucugggCCGCGGGGGCcgaGGaagugugCCCGGAAGa -3'
miRNA:   3'- -GGCG------------GGCGCCCCUG---CCg------GGGCCUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.