miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 30848 0.69 0.323369
Target:  5'- cCCGCgcugcuucugggCCGCGGGGGCcgaGGaagugugCCCGGAAGa -3'
miRNA:   3'- -GGCG------------GGCGCCCCUG---CCg------GGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 3087 0.69 0.323369
Target:  5'- -gGUCCGCGGcGGcgGCGGCCgCGGAGc- -3'
miRNA:   3'- ggCGGGCGCC-CC--UGCCGGgGCCUUca -5'
5537 5' -66 NC_001806.1 + 34323 0.69 0.330218
Target:  5'- gCGCCgGaCGGGGcgcuggagauaACGGCCCCcGggGa -3'
miRNA:   3'- gGCGGgC-GCCCC-----------UGCCGGGGcCuuCa -5'
5537 5' -66 NC_001806.1 + 113067 0.69 0.330218
Target:  5'- gCCGCCaauccguaCGGGGcguacgugGCGGCCCCGGccGg -3'
miRNA:   3'- -GGCGGgc------GCCCC--------UGCCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 102338 0.69 0.330218
Target:  5'- gCGuCCCG-GGGGACgucccccggGGCCgCCGGGAGc -3'
miRNA:   3'- gGC-GGGCgCCCCUG---------CCGG-GGCCUUCa -5'
5537 5' -66 NC_001806.1 + 85980 0.69 0.335075
Target:  5'- gCCuCCCGgGGGGuCGGCaggcgacggcgucuCCCGGggGc -3'
miRNA:   3'- -GGcGGGCgCCCCuGCCG--------------GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 89911 0.69 0.336472
Target:  5'- gCCGgCCGcCGGGGuucauCGGCgaccccgugguuaCCCGGggGg -3'
miRNA:   3'- -GGCgGGC-GCCCCu----GCCG-------------GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 6659 0.69 0.337172
Target:  5'- cCUGCUCGuCGGGggggagcaugucGugGGCCCUGGAAa- -3'
miRNA:   3'- -GGCGGGC-GCCC------------CugCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 28683 0.69 0.337172
Target:  5'- gCCGCCCGCcauauuugGGGGACG-CCgUGGGAc- -3'
miRNA:   3'- -GGCGGGCG--------CCCCUGCcGGgGCCUUca -5'
5537 5' -66 NC_001806.1 + 127185 0.69 0.337172
Target:  5'- gUGCCCccggauaugcGCGGGGuuacGCgGGCCCCGGGGa- -3'
miRNA:   3'- gGCGGG----------CGCCCC----UG-CCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 9945 0.69 0.350679
Target:  5'- -gGCCggaguguUGUGGGGACGcGUCCCGGAAc- -3'
miRNA:   3'- ggCGG-------GCGCCCCUGC-CGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 60001 0.69 0.3514
Target:  5'- -gGaCCCG-GGGGACGGCCggguCCGGAGc- -3'
miRNA:   3'- ggC-GGGCgCCCCUGCCGG----GGCCUUca -5'
5537 5' -66 NC_001806.1 + 20707 0.69 0.3514
Target:  5'- uCCGUU--CGGGGugGGCCcgCCGGggGg -3'
miRNA:   3'- -GGCGGgcGCCCCugCCGG--GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 75236 0.69 0.358672
Target:  5'- aCCGCguccuggucgaCGCGGuGACGGCCCUGGgcGc -3'
miRNA:   3'- -GGCGg----------GCGCCcCUGCCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 102089 0.69 0.358672
Target:  5'- gCC-UCCGaaGGGACGGCUCCGGGGa- -3'
miRNA:   3'- -GGcGGGCgcCCCUGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 52552 0.68 0.369029
Target:  5'- -gGUCCGCGGGGccucccccggacgacAUGGCcagcggCCCGGggGg -3'
miRNA:   3'- ggCGGGCGCCCC---------------UGCCG------GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 74923 0.68 0.37353
Target:  5'- gCCGUUCG-GGGGGCGcCCCCuGAGGUu -3'
miRNA:   3'- -GGCGGGCgCCCCUGCcGGGGcCUUCA- -5'
5537 5' -66 NC_001806.1 + 18132 0.68 0.381113
Target:  5'- gCCGUUCGCGGcGaACGGCCCCGa---- -3'
miRNA:   3'- -GGCGGGCGCC-CcUGCCGGGGCcuuca -5'
5537 5' -66 NC_001806.1 + 24520 0.68 0.388799
Target:  5'- gCUGCCgGCgcuggacggccGGGcGGCGGCCUCGGGGa- -3'
miRNA:   3'- -GGCGGgCG-----------CCC-CUGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 31096 0.68 0.388799
Target:  5'- cCCGgCUGCGGGccGCGGuCCCCGGcuGg -3'
miRNA:   3'- -GGCgGGCGCCCc-UGCC-GGGGCCuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.