miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 20597 0.68 0.388799
Target:  5'- cCCGCCCauggcagauggcGCGGauGGGCGGggCCGGggGUu -3'
miRNA:   3'- -GGCGGG------------CGCC--CCUGCCggGGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 52552 0.68 0.369029
Target:  5'- -gGUCCGCGGGGccucccccggacgacAUGGCcagcggCCCGGggGg -3'
miRNA:   3'- ggCGGGCGCCCC---------------UGCCG------GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 74923 0.68 0.37353
Target:  5'- gCCGUUCG-GGGGGCGcCCCCuGAGGUu -3'
miRNA:   3'- -GGCGGGCgCCCCUGCcGGGGcCUUCA- -5'
5537 5' -66 NC_001806.1 + 18132 0.68 0.381113
Target:  5'- gCCGUUCGCGGcGaACGGCCCCGa---- -3'
miRNA:   3'- -GGCGGGCGCC-CcUGCCGGGGCcuuca -5'
5537 5' -66 NC_001806.1 + 53884 0.68 0.388799
Target:  5'- -aGCCgCGCGGGGAUcagGGUCgCCGGGGc- -3'
miRNA:   3'- ggCGG-GCGCCCCUG---CCGG-GGCCUUca -5'
5537 5' -66 NC_001806.1 + 24520 0.68 0.388799
Target:  5'- gCUGCCgGCgcuggacggccGGGcGGCGGCCUCGGGGa- -3'
miRNA:   3'- -GGCGGgCG-----------CCC-CUGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 31096 0.68 0.388799
Target:  5'- cCCGgCUGCGGGccGCGGuCCCCGGcuGg -3'
miRNA:   3'- -GGCgGGCGCCCc-UGCC-GGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 147772 0.68 0.396586
Target:  5'- gCCGCggaCGCGGGG--GGCCCggggCGGggGg -3'
miRNA:   3'- -GGCGg--GCGCCCCugCCGGG----GCCuuCa -5'
5537 5' -66 NC_001806.1 + 147829 0.68 0.396586
Target:  5'- -gGCCUGUGGGGAgaGGCCggGGggGa -3'
miRNA:   3'- ggCGGGCGCCCCUg-CCGGggCCuuCa -5'
5537 5' -66 NC_001806.1 + 30733 0.68 0.412457
Target:  5'- aCC-CCCGCGGGGGCcGCCucuuccgccgCCGGGGc- -3'
miRNA:   3'- -GGcGGGCGCCCCUGcCGG----------GGCCUUca -5'
5537 5' -66 NC_001806.1 + 117954 0.68 0.404472
Target:  5'- aCCGCCCGaCGacaGcGAcgcCGGUCCCGGAGGc -3'
miRNA:   3'- -GGCGGGC-GCc--C-CU---GCCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 49615 0.68 0.404472
Target:  5'- cCCGCCCaaGGuGGA-GGUUCUGGAGGg -3'
miRNA:   3'- -GGCGGGcgCC-CCUgCCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 25931 0.68 0.404472
Target:  5'- gCGCgCGCGGcGGGCgugggggcggGGCCgCGGGAGc -3'
miRNA:   3'- gGCGgGCGCC-CCUG----------CCGGgGCCUUCa -5'
5537 5' -66 NC_001806.1 + 26695 0.68 0.412457
Target:  5'- aCCGCCC--GGcGugGGCCCgGGggGc -3'
miRNA:   3'- -GGCGGGcgCCcCugCCGGGgCCuuCa -5'
5537 5' -66 NC_001806.1 + 3129 0.68 0.412457
Target:  5'- cCCGCggcagCGCGGGGcccAgGGCCCCGGc--- -3'
miRNA:   3'- -GGCGg----GCGCCCC---UgCCGGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 148146 0.68 0.411654
Target:  5'- cCCGCCCGUcacgGGGGGCGcggcggcGCCUCugcguGGggGg -3'
miRNA:   3'- -GGCGGGCG----CCCCUGC-------CGGGG-----CCuuCa -5'
5537 5' -66 NC_001806.1 + 80224 0.68 0.410051
Target:  5'- cCCGCCCcccacauacuugacGCuGGaGGGCGGUguugcgCCCGGAGGc -3'
miRNA:   3'- -GGCGGG--------------CG-CC-CCUGCCG------GGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 18883 0.68 0.404472
Target:  5'- aCGUgCGCGGGGccagACGGgCUCGGcAGUa -3'
miRNA:   3'- gGCGgGCGCCCC----UGCCgGGGCCuUCA- -5'
5537 5' -66 NC_001806.1 + 136246 0.68 0.396586
Target:  5'- gCUGCCCGCugauGGGGucuCGcacgagccagucGCCCCGGcGGUg -3'
miRNA:   3'- -GGCGGGCG----CCCCu--GC------------CGGGGCCuUCA- -5'
5537 5' -66 NC_001806.1 + 126866 0.68 0.396586
Target:  5'- uCCGCCUG-GaGGACGGCgCCGGGGc- -3'
miRNA:   3'- -GGCGGGCgCcCCUGCCGgGGCCUUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.