miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 107036 0.73 0.17726
Target:  5'- gCCGCCCGCGGGGcCGcgggcuguGCCgCGGAuucuGUg -3'
miRNA:   3'- -GGCGGGCGCCCCuGC--------CGGgGCCUu---CA- -5'
5537 5' -66 NC_001806.1 + 106788 0.74 0.165257
Target:  5'- uCCG-CCGCGuGGGCGGCuaCCCGGAGGa -3'
miRNA:   3'- -GGCgGGCGCcCCUGCCG--GGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 102338 0.69 0.330218
Target:  5'- gCGuCCCG-GGGGACgucccccggGGCCgCCGGGAGc -3'
miRNA:   3'- gGC-GGGCgCCCCUG---------CCGG-GGCCUUCa -5'
5537 5' -66 NC_001806.1 + 102089 0.69 0.358672
Target:  5'- gCC-UCCGaaGGGACGGCUCCGGGGa- -3'
miRNA:   3'- -GGcGGGCgcCCCUGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 99730 0.66 0.506202
Target:  5'- gCGCUgugugGUGGGGggcgauacACGGCCuCCGGggGa -3'
miRNA:   3'- gGCGGg----CGCCCC--------UGCCGG-GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 95434 0.66 0.470948
Target:  5'- -gGCCCGgGGGGcaGgGGCCCgagacgUGGggGg -3'
miRNA:   3'- ggCGGGCgCCCC--UgCCGGG------GCCuuCa -5'
5537 5' -66 NC_001806.1 + 93891 0.74 0.157666
Target:  5'- -gGCCCGCGGGaGGCcGCCCCGaaGAGGg -3'
miRNA:   3'- ggCGGGCGCCC-CUGcCGGGGC--CUUCa -5'
5537 5' -66 NC_001806.1 + 93580 0.66 0.488425
Target:  5'- gCCGUUCgGCGGcccGGgGGCCCCGGGAc- -3'
miRNA:   3'- -GGCGGG-CGCCc--CUgCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 93460 0.66 0.479647
Target:  5'- gUGgUCGaCGGacGCGGCCCUGGAGGUg -3'
miRNA:   3'- gGCgGGC-GCCccUGCCGGGGCCUUCA- -5'
5537 5' -66 NC_001806.1 + 92913 0.71 0.272404
Target:  5'- -gGUCCGCGcagggcGGGGCGGgCCUGGAGGc -3'
miRNA:   3'- ggCGGGCGC------CCCUGCCgGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 89911 0.69 0.336472
Target:  5'- gCCGgCCGcCGGGGuucauCGGCgaccccgugguuaCCCGGggGg -3'
miRNA:   3'- -GGCgGGC-GCCCCu----GCCG-------------GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 89435 0.66 0.515193
Target:  5'- gCCGCuuGgGuGGGAUGGCaaaauuaCCGGAc-- -3'
miRNA:   3'- -GGCGggCgC-CCCUGCCGg------GGCCUuca -5'
5537 5' -66 NC_001806.1 + 86380 0.66 0.474418
Target:  5'- uCC-UCCGCGGGGcgcucggcuaacgcgGCGGCCgcuCCGGAgacGGUa -3'
miRNA:   3'- -GGcGGGCGCCCC---------------UGCCGG---GGCCU---UCA- -5'
5537 5' -66 NC_001806.1 + 85980 0.69 0.335075
Target:  5'- gCCuCCCGgGGGGuCGGCaggcgacggcgucuCCCGGggGc -3'
miRNA:   3'- -GGcGGGCgCCCCuGCCG--------------GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 83952 0.66 0.470948
Target:  5'- gCCGCUCGCaacGGGGAauucgagaCGGUCgCCGGGGa- -3'
miRNA:   3'- -GGCGGGCG---CCCCU--------GCCGG-GGCCUUca -5'
5537 5' -66 NC_001806.1 + 83253 0.73 0.18143
Target:  5'- -gGCCCGCGGGGggGCGGgCgaCGGAGGg -3'
miRNA:   3'- ggCGGGCGCCCC--UGCCgGg-GCCUUCa -5'
5537 5' -66 NC_001806.1 + 80224 0.68 0.410051
Target:  5'- cCCGCCCcccacauacuugacGCuGGaGGGCGGUguugcgCCCGGAGGc -3'
miRNA:   3'- -GGCGGG--------------CG-CC-CCUGCCG------GGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 77937 0.66 0.479647
Target:  5'- -gGCCCaGCuggaauGGGGgggugacgcgGCGGCCCCGGGGc- -3'
miRNA:   3'- ggCGGG-CG------CCCC----------UGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 75236 0.69 0.358672
Target:  5'- aCCGCguccuggucgaCGCGGuGACGGCCCUGGgcGc -3'
miRNA:   3'- -GGCGg----------GCGCCcCUGCCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 74923 0.68 0.37353
Target:  5'- gCCGUUCG-GGGGGCGcCCCCuGAGGUu -3'
miRNA:   3'- -GGCGGGCgCCCCUGCcGGGGcCUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.