miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 134229 0.74 0.161421
Target:  5'- -gGCCaCGCagucggagcggGGGGGCGGCCCCGGcAGc -3'
miRNA:   3'- ggCGG-GCG-----------CCCCUGCCGGGGCCuUCa -5'
5537 5' -66 NC_001806.1 + 133229 0.74 0.16487
Target:  5'- aCGCCCgGCGGGccaucgaGACGGCCgUGGGAGc -3'
miRNA:   3'- gGCGGG-CGCCC-------CUGCCGGgGCCUUCa -5'
5537 5' -66 NC_001806.1 + 132837 0.74 0.155084
Target:  5'- cCCGCCCGCGGccgucgggcccgucuGGACGGCgcgguuuugcuucCCCGGAc-- -3'
miRNA:   3'- -GGCGGGCGCC---------------CCUGCCG-------------GGGCCUuca -5'
5537 5' -66 NC_001806.1 + 132675 0.68 0.404472
Target:  5'- aCGCCgCGCuccuGGGGGCcuGGCCCgCGGuGGg -3'
miRNA:   3'- gGCGG-GCG----CCCCUG--CCGGG-GCCuUCa -5'
5537 5' -66 NC_001806.1 + 132503 0.66 0.497278
Target:  5'- gCCGCCCcCGGGGcccUGGCCCCc----- -3'
miRNA:   3'- -GGCGGGcGCCCCu--GCCGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 128047 0.72 0.213114
Target:  5'- aUGCCCGUGGcGGccACGGCCCCcagguGGggGc -3'
miRNA:   3'- gGCGGGCGCC-CC--UGCCGGGG-----CCuuCa -5'
5537 5' -66 NC_001806.1 + 127185 0.69 0.337172
Target:  5'- gUGCCCccggauaugcGCGGGGuuacGCgGGCCCCGGGGa- -3'
miRNA:   3'- gGCGGG----------CGCCCC----UG-CCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 126866 0.68 0.396586
Target:  5'- uCCGCCUG-GaGGACGGCgCCGGGGc- -3'
miRNA:   3'- -GGCGGGCgCcCCUGCCGgGGCCUUca -5'
5537 5' -66 NC_001806.1 + 121523 0.66 0.497278
Target:  5'- -gGCCCGCcaucuGGGAUGGCuCCUGGccAGGa -3'
miRNA:   3'- ggCGGGCGc----CCCUGCCG-GGGCC--UUCa -5'
5537 5' -66 NC_001806.1 + 120878 0.71 0.260714
Target:  5'- gCCGCCUGguccccCGGGGACcuuGCCCCGGccGg -3'
miRNA:   3'- -GGCGGGC------GCCCCUGc--CGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 119546 0.66 0.506202
Target:  5'- gCCGUCaGCGGGGGCG-CCauGGggGc -3'
miRNA:   3'- -GGCGGgCGCCCCUGCcGGggCCuuCa -5'
5537 5' -66 NC_001806.1 + 117954 0.68 0.404472
Target:  5'- aCCGCCCGaCGacaGcGAcgcCGGUCCCGGAGGc -3'
miRNA:   3'- -GGCGGGC-GCc--C-CU---GCCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 115652 0.66 0.479647
Target:  5'- gUGCCCGCaacGGGGAa-GCCCacgcgCGGGAGa -3'
miRNA:   3'- gGCGGGCG---CCCCUgcCGGG-----GCCUUCa -5'
5537 5' -66 NC_001806.1 + 115214 0.75 0.150391
Target:  5'- uCCGCCgGCccugcaacccccGGGGACGcGCCgCCGGggGc -3'
miRNA:   3'- -GGCGGgCG------------CCCCUGC-CGG-GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 114071 0.66 0.497278
Target:  5'- cCCGCCuucuCGCGGGGccgcuGCuGCaCCgCGGggGUu -3'
miRNA:   3'- -GGCGG----GCGCCCC-----UGcCG-GG-GCCuuCA- -5'
5537 5' -66 NC_001806.1 + 113838 0.7 0.316627
Target:  5'- aCGCCCugauGCGGcGcGCGGCCCUGGAc-- -3'
miRNA:   3'- gGCGGG----CGCC-CcUGCCGGGGCCUuca -5'
5537 5' -66 NC_001806.1 + 113291 0.68 0.396586
Target:  5'- gCUGCCgGgGGGGGacguuccccCGGCcggCCCGGggGa -3'
miRNA:   3'- -GGCGGgCgCCCCU---------GCCG---GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 113067 0.69 0.330218
Target:  5'- gCCGCCaauccguaCGGGGcguacgugGCGGCCCCGGccGg -3'
miRNA:   3'- -GGCGGgc------GCCCC--------UGCCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 112039 0.7 0.290722
Target:  5'- aUCGCCCugcucaCGGGGGaGGCCCUGGAcgGGa -3'
miRNA:   3'- -GGCGGGc-----GCCCCUgCCGGGGCCU--UCa -5'
5537 5' -66 NC_001806.1 + 109077 0.71 0.255023
Target:  5'- aCGCCCGCGGGGc---CCCCGcGGAGc -3'
miRNA:   3'- gGCGGGCGCCCCugccGGGGC-CUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.