miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 24681 0.73 0.171321
Target:  5'- aGGCGGUgcgcgCCGGcCCGGcccgguggcgcGGGCCGCGGa -3'
miRNA:   3'- gCCGCCGa----GGUC-GGCC-----------CCUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 24780 0.67 0.409183
Target:  5'- uGcGCGGCgacgacgaCGGcCCGGGGgcccuGCCGcCGGCg -3'
miRNA:   3'- gC-CGCCGag------GUC-GGCCCC-----UGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 24872 0.71 0.210464
Target:  5'- gCGGCGGCgggggCCGuggagguGCUGGGGGCgGaGGCg -3'
miRNA:   3'- -GCCGCCGa----GGU-------CGGCCCCUGgCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 25532 0.67 0.393372
Target:  5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCc -3'
miRNA:   3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 25564 0.67 0.393372
Target:  5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCc -3'
miRNA:   3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 25612 0.68 0.362965
Target:  5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCu -3'
miRNA:   3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 25908 0.72 0.20618
Target:  5'- gGGCGGCggUCCGGgCGGcGugCGCGcGCg -3'
miRNA:   3'- gCCGCCG--AGGUCgGCCcCugGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 25937 0.66 0.441962
Target:  5'- gCGGCgGGCguggGGgCGGGG-CCGCGGg -3'
miRNA:   3'- -GCCG-CCGagg-UCgGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 26254 0.74 0.138481
Target:  5'- uGGCGGCgggCAGCCcGGGccccCCGCGGCc -3'
miRNA:   3'- gCCGCCGag-GUCGGcCCCu---GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 27008 0.67 0.392592
Target:  5'- gGGCucGGUUCCGgcGCCGGGuggcggaGGCCGaGGCg -3'
miRNA:   3'- gCCG--CCGAGGU--CGGCCC-------CUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 27279 0.76 0.103667
Target:  5'- uCGGCGGCcgCCAGCgCGgcGGGGCC-CGGCc -3'
miRNA:   3'- -GCCGCCGa-GGUCG-GC--CCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 27459 0.69 0.292417
Target:  5'- gGGCGGCcCCGGCCGcccuucccgcuuccGGcaauucCCGCGGCc -3'
miRNA:   3'- gCCGCCGaGGUCGGC--------------CCcu----GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 27828 0.69 0.288033
Target:  5'- uGGgGGCgCCGGguugguccCCGGGGAcggggccgccCCGCGGUg -3'
miRNA:   3'- gCCgCCGaGGUC--------GGCCCCU----------GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 29940 0.77 0.081123
Target:  5'- gGGCGGCUCCcgccagucgcgAGCCGcGGcGCCGCGGg -3'
miRNA:   3'- gCCGCCGAGG-----------UCGGC-CCcUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 30032 0.68 0.370412
Target:  5'- aGGCGGgg-CGGCCGaGGGGCCGgacgGGCc -3'
miRNA:   3'- gCCGCCgagGUCGGC-CCCUGGCg---CCG- -5'
5538 3' -66.7 NC_001806.1 + 30400 0.73 0.159665
Target:  5'- aCGGUGGCgCgCGGCUcggGGGGGCCG-GGCg -3'
miRNA:   3'- -GCCGCCGaG-GUCGG---CCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 30608 0.73 0.17052
Target:  5'- gGGCGGCgacgcacccccccUCCgacucagGGCCgGGGGGgCGCGGCc -3'
miRNA:   3'- gCCGCCG-------------AGG-------UCGG-CCCCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 30739 0.68 0.369663
Target:  5'- gCGGgGGCcgccucuUCCGccGCCGGGG-CCGCGu- -3'
miRNA:   3'- -GCCgCCG-------AGGU--CGGCCCCuGGCGCcg -5'
5538 3' -66.7 NC_001806.1 + 31090 0.71 0.210945
Target:  5'- uGGCGaC-CCGGCUGcGGGCCGCGGUc -3'
miRNA:   3'- gCCGCcGaGGUCGGCcCCUGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 32550 0.7 0.275189
Target:  5'- uGGCGGUcuUCCAGCCggcccuuagauaaGGGGGCaguugGUGGUc -3'
miRNA:   3'- gCCGCCG--AGGUCGG-------------CCCCUGg----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.