miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 20715 0.69 0.31379
Target:  5'- gGGUgGGC-CCgccgggggGGCgGGGGGCCgGCGGCc -3'
miRNA:   3'- gCCG-CCGaGG--------UCGgCCCCUGG-CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 20991 0.67 0.425385
Target:  5'- aCGGCGGgggUC-GUCGGGGuCCGUGGg -3'
miRNA:   3'- -GCCGCCga-GGuCGGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 21501 0.72 0.201507
Target:  5'- cCGGCgaccgGGCcCCGGCCcGGGGCCGCGa- -3'
miRNA:   3'- -GCCG-----CCGaGGUCGGcCCCUGGCGCcg -5'
5538 3' -66.7 NC_001806.1 + 21926 0.67 0.377963
Target:  5'- gCGGCGGUggCCGGCCGcgacgccacGGGcccuucacgGCCG-GGCa -3'
miRNA:   3'- -GCCGCCGa-GGUCGGC---------CCC---------UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 21975 0.66 0.450387
Target:  5'- cCGGCGGgUCgAGCUGGacGCCGacgcgaccucCGGCg -3'
miRNA:   3'- -GCCGCCgAGgUCGGCCccUGGC----------GCCG- -5'
5538 3' -66.7 NC_001806.1 + 22097 0.66 0.458899
Target:  5'- aCGGCGGCcugggcgaCAGCCgcccgggccucuGGGGGgCGCccgaGGCg -3'
miRNA:   3'- -GCCGCCGag------GUCGG------------CCCCUgGCG----CCG- -5'
5538 3' -66.7 NC_001806.1 + 22276 0.74 0.146626
Target:  5'- gGGUGGCUCCAGaacccgcgcguggucCcCGGGGA-CGUGGCg -3'
miRNA:   3'- gCCGCCGAGGUC---------------G-GCCCCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 22424 0.77 0.087344
Target:  5'- cCGGCcGCUUCGGCUGGGGccuggcGCaCGCGGCg -3'
miRNA:   3'- -GCCGcCGAGGUCGGCCCC------UG-GCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 22544 0.69 0.288033
Target:  5'- uGGCGcGCgagaaCgCGGCgcugaCGGGGGCCGCGGg -3'
miRNA:   3'- gCCGC-CGa----G-GUCG-----GCCCCUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 22644 0.68 0.362965
Target:  5'- gCGcGCGGUgCCcGCCGGGuacggcGCCGCGGg -3'
miRNA:   3'- -GC-CGCCGaGGuCGGCCCc-----UGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 22871 0.73 0.159289
Target:  5'- uGGCGGCcgUCCcggggcuGGCCGGGG-CC-CGGCc -3'
miRNA:   3'- gCCGCCG--AGG-------UCGGCCCCuGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 23214 0.67 0.425385
Target:  5'- gCGGCGGCggCCAGCgcacCGGacGCCGCcgacgcgcuGGCg -3'
miRNA:   3'- -GCCGCCGa-GGUCG----GCCccUGGCG---------CCG- -5'
5538 3' -66.7 NC_001806.1 + 23305 0.7 0.247009
Target:  5'- cCGGCccGGC-CCGGCCGcccGGaGGCgGCGGCc -3'
miRNA:   3'- -GCCG--CCGaGGUCGGC---CC-CUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 23459 0.67 0.393372
Target:  5'- -cGCGGCgCC--CCGGGccGCCGCGGCg -3'
miRNA:   3'- gcCGCCGaGGucGGCCCc-UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 23550 0.73 0.155942
Target:  5'- uGGCGGCggCAGCCcccGGGGCCcagccacacgGCGGCg -3'
miRNA:   3'- gCCGCCGagGUCGGc--CCCUGG----------CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 23794 0.67 0.409183
Target:  5'- aCGG-GGCc---GCCGGGGGCCGCcucuuuGGCc -3'
miRNA:   3'- -GCCgCCGagguCGGCCCCUGGCG------CCG- -5'
5538 3' -66.7 NC_001806.1 + 23938 0.72 0.18373
Target:  5'- cCGGCGGCgg-GGCCuggGGGGGCCGcCGGa -3'
miRNA:   3'- -GCCGCCGaggUCGG---CCCCUGGC-GCCg -5'
5538 3' -66.7 NC_001806.1 + 24003 0.66 0.433627
Target:  5'- uGGCGGCccuggccaaCCGGCUGuGcGGGCCGgacaCGGCc -3'
miRNA:   3'- gCCGCCGa--------GGUCGGC-C-CCUGGC----GCCG- -5'
5538 3' -66.7 NC_001806.1 + 24117 0.66 0.467496
Target:  5'- -cGCGGgaCCuggccuucGCCGGGG-CCGUGGa -3'
miRNA:   3'- gcCGCCgaGGu-------CGGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 24155 0.68 0.334227
Target:  5'- gGGCuGCUcgCCAgcGCCGGcGACCGgCGGCu -3'
miRNA:   3'- gCCGcCGA--GGU--CGGCCcCUGGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.