miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 4144 0.66 0.464047
Target:  5'- gGGCGGCUgucgCCcaggccgccguacAGCacccgccccgggggCGGGGGCC-CGGCg -3'
miRNA:   3'- gCCGCCGA----GG-------------UCG--------------GCCCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 4267 0.67 0.393372
Target:  5'- uCGGCGuccaGCUCgAcccGCCGGGGcuGCC-CGGCc -3'
miRNA:   3'- -GCCGC----CGAGgU---CGGCCCC--UGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 4347 0.7 0.281859
Target:  5'- cCGGCGGCgcucgaugCGGcCCGcGGaGGCCGCGGg -3'
miRNA:   3'- -GCCGCCGag------GUC-GGC-CC-CUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 4443 0.82 0.035531
Target:  5'- gGGCGGCgUCCGcCCGGGGGCUGcCGGCg -3'
miRNA:   3'- gCCGCCG-AGGUcGGCCCCUGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 4658 0.76 0.098731
Target:  5'- gCGGCGGC-UgGGCCGGcGGG-CGCGGCg -3'
miRNA:   3'- -GCCGCCGaGgUCGGCC-CCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 4736 0.73 0.159289
Target:  5'- -cGCGGCcCCgGGCCGGGGcccggucGCCGgCGGCg -3'
miRNA:   3'- gcCGCCGaGG-UCGGCCCC-------UGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 4804 0.7 0.269827
Target:  5'- uCGuCGGCUCgaaaGGCgGGGGuCCGgGGCg -3'
miRNA:   3'- -GCcGCCGAGg---UCGgCCCCuGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 5095 0.76 0.108835
Target:  5'- gCGGCGGC-CCgucgguggGGcCCGGGGAgCCGgGGCg -3'
miRNA:   3'- -GCCGCCGaGG--------UC-GGCCCCU-GGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 5586 0.67 0.385617
Target:  5'- aCGcCGGCac--GCCGGGGGcCCGUGGCc -3'
miRNA:   3'- -GCcGCCGagguCGGCCCCU-GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 8845 0.66 0.43695
Target:  5'- aGuaGGCUUCgaccgaaacuggcgaGGCCGuGGGAUaaaGCGGCa -3'
miRNA:   3'- gCcgCCGAGG---------------UCGGC-CCCUGg--CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 9534 0.66 0.450387
Target:  5'- cCGGgGGggCCAGCCacGGGACC-UGGUc -3'
miRNA:   3'- -GCCgCCgaGGUCGGc-CCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 10114 0.7 0.2722
Target:  5'- gCGGCgcacGGCgcgUCGGCCGGGGacagacauucugggaGCUGCGGg -3'
miRNA:   3'- -GCCG----CCGa--GGUCGGCCCC---------------UGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 10404 0.69 0.300698
Target:  5'- aGGCGGg---AGCCGGGGGgucCCGCuGGCg -3'
miRNA:   3'- gCCGCCgaggUCGGCCCCU---GGCG-CCG- -5'
5538 3' -66.7 NC_001806.1 + 12798 0.67 0.375687
Target:  5'- cCGGCgaucaGGC-CCauguuguucgggguGGCCGGGGGaugguaaggcgUCGCGGCg -3'
miRNA:   3'- -GCCG-----CCGaGG--------------UCGGCCCCU-----------GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 14030 0.67 0.377963
Target:  5'- aCGGCcgGGCUaCC-GCgaucuuuauUGGGGGCCGgGGCc -3'
miRNA:   3'- -GCCG--CCGA-GGuCG---------GCCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 15167 0.66 0.450387
Target:  5'- aCGGgaaGGC-UgGGCCcGGGGACUGgGGUa -3'
miRNA:   3'- -GCCg--CCGaGgUCGG-CCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 16147 0.69 0.31379
Target:  5'- aCGGC-GCUUaggagcuGCCGGGaGACCGCuGCg -3'
miRNA:   3'- -GCCGcCGAGgu-----CGGCCC-CUGGCGcCG- -5'
5538 3' -66.7 NC_001806.1 + 20312 0.69 0.288033
Target:  5'- gGGCGGUcccgcccgCCGGCCaauggGGGGGCgGCaaGGCg -3'
miRNA:   3'- gCCGCCGa-------GGUCGG-----CCCCUGgCG--CCG- -5'
5538 3' -66.7 NC_001806.1 + 20399 0.72 0.196928
Target:  5'- gGGCGGgaCCGGggggcCCGGGGACgGCcaacgGGCg -3'
miRNA:   3'- gCCGCCgaGGUC-----GGCCCCUGgCG-----CCG- -5'
5538 3' -66.7 NC_001806.1 + 20622 0.71 0.215315
Target:  5'- gGGCGG----GGCCGGGGguucgaccaacggGCCGCGGCc -3'
miRNA:   3'- gCCGCCgaggUCGGCCCC-------------UGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.