miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 43713 0.66 0.458899
Target:  5'- cCGGgGGaacCCGGUCGGGGgggauuggggugACCGaGGCg -3'
miRNA:   3'- -GCCgCCga-GGUCGGCCCC------------UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 8845 0.66 0.43695
Target:  5'- aGuaGGCUUCgaccgaaacuggcgaGGCCGuGGGAUaaaGCGGCa -3'
miRNA:   3'- gCcgCCGAGG---------------UCGGC-CCCUGg--CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 77113 0.66 0.467496
Target:  5'- gGGCGccaagaGCgccgagCgGGCCGGGG-CCGUGGa -3'
miRNA:   3'- gCCGC------CGa-----GgUCGGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 52610 0.66 0.441962
Target:  5'- gGGUGGgaCCuGUCGGGaaaagauucagcGGgCGCGGCg -3'
miRNA:   3'- gCCGCCgaGGuCGGCCC------------CUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 87669 0.66 0.476175
Target:  5'- cCGGCGGCguagUAGgCGGGGAugUCGCGa- -3'
miRNA:   3'- -GCCGCCGag--GUCgGCCCCU--GGCGCcg -5'
5538 3' -66.7 NC_001806.1 + 25937 0.66 0.441962
Target:  5'- gCGGCgGGCguggGGgCGGGG-CCGCGGg -3'
miRNA:   3'- -GCCG-CCGagg-UCgGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 24117 0.66 0.467496
Target:  5'- -cGCGGgaCCuggccuucGCCGGGG-CCGUGGa -3'
miRNA:   3'- gcCGCCgaGGu-------CGGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 22097 0.66 0.458899
Target:  5'- aCGGCGGCcugggcgaCAGCCgcccgggccucuGGGGGgCGCccgaGGCg -3'
miRNA:   3'- -GCCGCCGag------GUCGG------------CCCCUgGCG----CCG- -5'
5538 3' -66.7 NC_001806.1 + 76540 0.66 0.464908
Target:  5'- cCGaGCGGgUCaCGGCgGGGcugcgggaggugcuGGCCGCGcGCg -3'
miRNA:   3'- -GC-CGCCgAG-GUCGgCCC--------------CUGGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 50683 0.66 0.441962
Target:  5'- gCGGCGGCcacgcgcgccauUCUGGCCGccGGGCUcguccugcaGCGGCu -3'
miRNA:   3'- -GCCGCCG------------AGGUCGGCc-CCUGG---------CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 21975 0.66 0.450387
Target:  5'- cCGGCGGgUCgAGCUGGacGCCGacgcgaccucCGGCg -3'
miRNA:   3'- -GCCGCCgAGgUCGGCCccUGGC----------GCCG- -5'
5538 3' -66.7 NC_001806.1 + 90318 0.66 0.433627
Target:  5'- uGGUcgugGGUUCUcgcacgacggGGCuCGGGGguACCGCGGUg -3'
miRNA:   3'- gCCG----CCGAGG----------UCG-GCCCC--UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 44620 0.66 0.441962
Target:  5'- cCGGCGucaGCUcgCCGGCauagaCGaGGGACCGCccucGGCg -3'
miRNA:   3'- -GCCGC---CGA--GGUCG-----GC-CCCUGGCG----CCG- -5'
5538 3' -66.7 NC_001806.1 + 147107 0.66 0.476175
Target:  5'- -cGCGGC-CCAGaagcagcgCGGGGGCCGagggaGGUu -3'
miRNA:   3'- gcCGCCGaGGUCg-------GCCCCUGGCg----CCG- -5'
5538 3' -66.7 NC_001806.1 + 45328 0.66 0.433627
Target:  5'- gGGCgGGCgcgaUgGGaUCGGGGGCgCGCGGUg -3'
miRNA:   3'- gCCG-CCGa---GgUC-GGCCCCUG-GCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 147800 0.66 0.450387
Target:  5'- gGGCGGagcCUGGCaUGGGcGCCGCGGg -3'
miRNA:   3'- gCCGCCga-GGUCG-GCCCcUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 75984 0.67 0.393372
Target:  5'- aGcGCGGC-CU--UCGGGG-CCGCGGCc -3'
miRNA:   3'- gC-CGCCGaGGucGGCCCCuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 20991 0.67 0.425385
Target:  5'- aCGGCGGgggUC-GUCGGGGuCCGUGGg -3'
miRNA:   3'- -GCCGCCga-GGuCGGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 23214 0.67 0.425385
Target:  5'- gCGGCGGCggCCAGCgcacCGGacGCCGCcgacgcgcuGGCg -3'
miRNA:   3'- -GCCGCCGa-GGUCG----GCCccUGGCG---------CCG- -5'
5538 3' -66.7 NC_001806.1 + 33795 0.67 0.425385
Target:  5'- uCGGUcucGGUagCCGGCCGGcggguGGACuCGCGGg -3'
miRNA:   3'- -GCCG---CCGa-GGUCGGCC-----CCUG-GCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.