miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 48886 0.74 0.145239
Target:  5'- aGcGCGGgaCCguuucccauuuGGCCGGGGGCUGgGGCg -3'
miRNA:   3'- gC-CGCCgaGG-----------UCGGCCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 22276 0.74 0.146626
Target:  5'- gGGUGGCUCCAGaacccgcgcguggucCcCGGGGA-CGUGGCg -3'
miRNA:   3'- gCCGCCGAGGUC---------------G-GCCCCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 86003 0.74 0.14873
Target:  5'- aCGGCGuCUCCcgggggcgcuuGGCCGGGGagggcaggGCCGCGGg -3'
miRNA:   3'- -GCCGCcGAGG-----------UCGGCCCC--------UGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 23550 0.73 0.155942
Target:  5'- uGGCGGCggCAGCCcccGGGGCCcagccacacgGCGGCg -3'
miRNA:   3'- gCCGCCGagGUCGGc--CCCUGG----------CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 37764 0.73 0.159289
Target:  5'- uCGGCGGCgggcgccuuucgcUCCggGGCCGGGGcgcggggguCCGCGGg -3'
miRNA:   3'- -GCCGCCG-------------AGG--UCGGCCCCu--------GGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 4736 0.73 0.159289
Target:  5'- -cGCGGCcCCgGGCCGGGGcccggucGCCGgCGGCg -3'
miRNA:   3'- gcCGCCGaGG-UCGGCCCC-------UGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 22871 0.73 0.159289
Target:  5'- uGGCGGCcgUCCcggggcuGGCCGGGG-CC-CGGCc -3'
miRNA:   3'- gCCGCCG--AGG-------UCGGCCCCuGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 30400 0.73 0.159665
Target:  5'- aCGGUGGCgCgCGGCUcggGGGGGCCG-GGCg -3'
miRNA:   3'- -GCCGCCGaG-GUCGG---CCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 147495 0.73 0.159665
Target:  5'- gGGCGGCgCCGGagGGGGcggcGCCGCGGg -3'
miRNA:   3'- gCCGCCGaGGUCggCCCC----UGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 151323 0.73 0.159665
Target:  5'- uGGCgccGGCUCgGGCgGGGGGCUGUccGGCc -3'
miRNA:   3'- gCCG---CCGAGgUCGgCCCCUGGCG--CCG- -5'
5538 3' -66.7 NC_001806.1 + 89569 0.73 0.167353
Target:  5'- gCGuCGGC-CCGGCCGGccgggcuuauGGACCGcCGGCg -3'
miRNA:   3'- -GCcGCCGaGGUCGGCC----------CCUGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 64954 0.73 0.167353
Target:  5'- cCGGCgucGGCgCCcgGGCCGGGGGucCCGgGGCa -3'
miRNA:   3'- -GCCG---CCGaGG--UCGGCCCCU--GGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 65650 0.73 0.167353
Target:  5'- cCGGCGGcCUCCcccuggguGGCUGcgcuGGGGCCGcCGGCc -3'
miRNA:   3'- -GCCGCC-GAGG--------UCGGC----CCCUGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 33108 0.73 0.167353
Target:  5'- gCGaGCGGgUCCGGaCGGGGcccggaccGCCGCGGUc -3'
miRNA:   3'- -GC-CGCCgAGGUCgGCCCC--------UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 30608 0.73 0.17052
Target:  5'- gGGCGGCgacgcacccccccUCCgacucagGGCCgGGGGGgCGCGGCc -3'
miRNA:   3'- gCCGCCG-------------AGG-------UCGG-CCCCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 24681 0.73 0.171321
Target:  5'- aGGCGGUgcgcgCCGGcCCGGcccgguggcgcGGGCCGCGGa -3'
miRNA:   3'- gCCGCCGa----GGUC-GGCC-----------CCUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 151531 0.73 0.174963
Target:  5'- gGGaCGGCgCCcgugggcccgggcGGCCGGGGGCgGCGGg -3'
miRNA:   3'- gCC-GCCGaGG-------------UCGGCCCCUGgCGCCg -5'
5538 3' -66.7 NC_001806.1 + 3644 0.73 0.175372
Target:  5'- aCGGCGGCgacccccucgUCAucugcgccggcGCCGGGGcuccCCGCGGCc -3'
miRNA:   3'- -GCCGCCGa---------GGU-----------CGGCCCCu---GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 148191 0.73 0.175372
Target:  5'- gCGG-GGCgUCCGGCgGGGGGCgGgCGGUa -3'
miRNA:   3'- -GCCgCCG-AGGUCGgCCCCUGgC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 3784 0.73 0.179508
Target:  5'- uCGGCGGCUCaUGGCCacGGcGGccGCCGCGuGCg -3'
miRNA:   3'- -GCCGCCGAG-GUCGG--CC-CC--UGGCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.