Results 21 - 40 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5538 | 3' | -66.7 | NC_001806.1 | + | 147800 | 0.66 | 0.450387 |
Target: 5'- gGGCGGagcCUGGCaUGGGcGCCGCGGg -3' miRNA: 3'- gCCGCCga-GGUCG-GCCCcUGGCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 59977 | 0.66 | 0.450387 |
Target: 5'- gGcGCGGCaccucUCUGGCCucGGGGACC-CGGg -3' miRNA: 3'- gC-CGCCG-----AGGUCGG--CCCCUGGcGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 45284 | 0.66 | 0.441962 |
Target: 5'- gCGGCGGgagacgcgggCCcGCgCGGGGAgCCGCccGGCg -3' miRNA: 3'- -GCCGCCga--------GGuCG-GCCCCU-GGCG--CCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 137674 | 0.66 | 0.441962 |
Target: 5'- gCGGuUGGCcCCGGCCacccacGGGGcGCUGcCGGCc -3' miRNA: 3'- -GCC-GCCGaGGUCGG------CCCC-UGGC-GCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 52610 | 0.66 | 0.441962 |
Target: 5'- gGGUGGgaCCuGUCGGGaaaagauucagcGGgCGCGGCg -3' miRNA: 3'- gCCGCCgaGGuCGGCCC------------CUgGCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 50683 | 0.66 | 0.441962 |
Target: 5'- gCGGCGGCcacgcgcgccauUCUGGCCGccGGGCUcguccugcaGCGGCu -3' miRNA: 3'- -GCCGCCG------------AGGUCGGCc-CCUGG---------CGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 119188 | 0.66 | 0.441962 |
Target: 5'- uGGCGccgccGCcccgCCGGCCGcgaaGGaGGCUGCGGCc -3' miRNA: 3'- gCCGC-----CGa---GGUCGGC----CC-CUGGCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 25937 | 0.66 | 0.441962 |
Target: 5'- gCGGCgGGCguggGGgCGGGG-CCGCGGg -3' miRNA: 3'- -GCCG-CCGagg-UCgGCCCCuGGCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 44620 | 0.66 | 0.441962 |
Target: 5'- cCGGCGucaGCUcgCCGGCauagaCGaGGGACCGCccucGGCg -3' miRNA: 3'- -GCCGC---CGA--GGUCG-----GC-CCCUGGCG----CCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 8845 | 0.66 | 0.43695 |
Target: 5'- aGuaGGCUUCgaccgaaacuggcgaGGCCGuGGGAUaaaGCGGCa -3' miRNA: 3'- gCcgCCGAGG---------------UCGGC-CCCUGg--CGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 45328 | 0.66 | 0.433627 |
Target: 5'- gGGCgGGCgcgaUgGGaUCGGGGGCgCGCGGUg -3' miRNA: 3'- gCCG-CCGa---GgUC-GGCCCCUG-GCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 41692 | 0.66 | 0.433627 |
Target: 5'- gGGCGGCgugCCGcccGCCGuguccuccccGGGACUgGCGGg -3' miRNA: 3'- gCCGCCGa--GGU---CGGC----------CCCUGG-CGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 120320 | 0.66 | 0.433627 |
Target: 5'- uGGgGGgaCggggCGGUCGGGGGCgGCGGg -3' miRNA: 3'- gCCgCCgaG----GUCGGCCCCUGgCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 24003 | 0.66 | 0.433627 |
Target: 5'- uGGCGGCccuggccaaCCGGCUGuGcGGGCCGgacaCGGCc -3' miRNA: 3'- gCCGCCGa--------GGUCGGC-C-CCUGGC----GCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 90318 | 0.66 | 0.433627 |
Target: 5'- uGGUcgugGGUUCUcgcacgacggGGCuCGGGGguACCGCGGUg -3' miRNA: 3'- gCCG----CCGAGG----------UCG-GCCCC--UGGCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 38395 | 0.66 | 0.431145 |
Target: 5'- gCGGCGGCUcuccgCCGGCuCGGGGGgguccucguccagaUCGCuGUc -3' miRNA: 3'- -GCCGCCGA-----GGUCG-GCCCCU--------------GGCGcCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 56657 | 0.67 | 0.42867 |
Target: 5'- cCGGCGGC-CCgugggaucguuggggGGUCgggGGGGACgGgGGCc -3' miRNA: 3'- -GCCGCCGaGG---------------UCGG---CCCCUGgCgCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 136676 | 0.67 | 0.425385 |
Target: 5'- cCGGCGaa-CCAGCCguuGGGGcugcagACCGCGGg -3' miRNA: 3'- -GCCGCcgaGGUCGG---CCCC------UGGCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 23214 | 0.67 | 0.425385 |
Target: 5'- gCGGCGGCggCCAGCgcacCGGacGCCGCcgacgcgcuGGCg -3' miRNA: 3'- -GCCGCCGa-GGUCG----GCCccUGGCG---------CCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 143259 | 0.67 | 0.425385 |
Target: 5'- gGGgGGaugUgGGCgGGGGugCGCGGg -3' miRNA: 3'- gCCgCCga-GgUCGgCCCCugGCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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