miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 34399 0.73 0.179508
Target:  5'- gGGCGGCgguggCCgGGCCGGgccGGGCCG-GGCc -3'
miRNA:   3'- gCCGCCGa----GG-UCGGCC---CCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 23938 0.72 0.18373
Target:  5'- cCGGCGGCgg-GGCCuggGGGGGCCGcCGGa -3'
miRNA:   3'- -GCCGCCGaggUCGG---CCCCUGGC-GCCg -5'
5538 3' -66.7 NC_001806.1 + 49574 0.72 0.18373
Target:  5'- cCGGaaGCcgUCgGGCCGGaGGACgGCGGCg -3'
miRNA:   3'- -GCCgcCG--AGgUCGGCC-CCUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 84823 0.72 0.18373
Target:  5'- -cGCGGCUCCGGCCcGGGcCCuaucaCGGCa -3'
miRNA:   3'- gcCGCCGAGGUCGGcCCCuGGc----GCCG- -5'
5538 3' -66.7 NC_001806.1 + 2739 0.72 0.185444
Target:  5'- uCGGCGGg-CCGGCgcgacacggccaCGGGGcgcgggcgggccugcGCCGCGGCg -3'
miRNA:   3'- -GCCGCCgaGGUCG------------GCCCC---------------UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 100374 0.72 0.192439
Target:  5'- aGGUaGCUCCcgucgccgggcGGCgCGGGGGCCGgGGUg -3'
miRNA:   3'- gCCGcCGAGG-----------UCG-GCCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 20399 0.72 0.196928
Target:  5'- gGGCGGgaCCGGggggcCCGGGGACgGCcaacgGGCg -3'
miRNA:   3'- gCCGCCgaGGUC-----GGCCCCUGgCG-----CCG- -5'
5538 3' -66.7 NC_001806.1 + 2818 0.72 0.201045
Target:  5'- gGGCgGGCUCgGGCCccgggggcguggaGGGGGgCGCGGg -3'
miRNA:   3'- gCCG-CCGAGgUCGG-------------CCCCUgGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 21501 0.72 0.201507
Target:  5'- cCGGCgaccgGGCcCCGGCCcGGGGCCGCGa- -3'
miRNA:   3'- -GCCG-----CCGaGGUCGGcCCCUGGCGCcg -5'
5538 3' -66.7 NC_001806.1 + 146179 0.72 0.201507
Target:  5'- uCGGUGGUcaggCAGCCcGGG-CCGCGGCu -3'
miRNA:   3'- -GCCGCCGag--GUCGGcCCCuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 25908 0.72 0.20618
Target:  5'- gGGCGGCggUCCGGgCGGcGugCGCGcGCg -3'
miRNA:   3'- gCCGCCG--AGGUCgGCCcCugGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 33758 0.72 0.20618
Target:  5'- uCGGCGGC---GGCUGcGGcGGCUGCGGCg -3'
miRNA:   3'- -GCCGCCGaggUCGGC-CC-CUGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 104682 0.72 0.20618
Target:  5'- gGGUGaGauaUCGGCCGGGGA-CGCGGCg -3'
miRNA:   3'- gCCGC-Cga-GGUCGGCCCCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 24872 0.71 0.210464
Target:  5'- gCGGCGGCgggggCCGuggagguGCUGGGGGCgGaGGCg -3'
miRNA:   3'- -GCCGCCGa----GGU-------CGGCCCCUGgCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 150995 0.71 0.210945
Target:  5'- -cGCGGCgcgCCAGgCGGGcGGCCGaGGCc -3'
miRNA:   3'- gcCGCCGa--GGUCgGCCC-CUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 31090 0.71 0.210945
Target:  5'- uGGCGaC-CCGGCUGcGGGCCGCGGUc -3'
miRNA:   3'- gCCGCcGaGGUCGGCcCCUGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 20622 0.71 0.215315
Target:  5'- gGGCGG----GGCCGGGGguucgaccaacggGCCGCGGCc -3'
miRNA:   3'- gCCGCCgaggUCGGCCCC-------------UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 113092 0.71 0.215805
Target:  5'- uGGCGGCcCCGGCCGGcc-CCGCcGCa -3'
miRNA:   3'- gCCGCCGaGGUCGGCCccuGGCGcCG- -5'
5538 3' -66.7 NC_001806.1 + 112328 0.71 0.220761
Target:  5'- aGGCGGg-CCAccGCCGGGaGGCCGUcgaGGCc -3'
miRNA:   3'- gCCGCCgaGGU--CGGCCC-CUGGCG---CCG- -5'
5538 3' -66.7 NC_001806.1 + 143387 0.71 0.220761
Target:  5'- aCGGCGacaacGCUCCccggcGGCCGGG--UCGCGGCu -3'
miRNA:   3'- -GCCGC-----CGAGG-----UCGGCCCcuGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.