miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 82720 0.67 0.401228
Target:  5'- -cGCGGUgUCCGGgguCUGcGGGGCgGCGGCg -3'
miRNA:   3'- gcCGCCG-AGGUC---GGC-CCCUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 126572 0.67 0.401228
Target:  5'- aGGCGGUgcUCC-GCCGcGGAUCG-GGCc -3'
miRNA:   3'- gCCGCCG--AGGuCGGCcCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 14030 0.67 0.377963
Target:  5'- aCGGCcgGGCUaCC-GCgaucuuuauUGGGGGCCGgGGCc -3'
miRNA:   3'- -GCCG--CCGA-GGuCG---------GCCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 147714 0.67 0.404398
Target:  5'- aGGCGGCgcUCgcacgcacggggccaCGGCCgcgcGGGGGCgCGCGGg -3'
miRNA:   3'- gCCGCCG--AG---------------GUCGG----CCCCUG-GCGCCg -5'
5538 3' -66.7 NC_001806.1 + 53864 0.67 0.412393
Target:  5'- aCGGCGGCcagcuguuuggcagCC-GCgCGGGGaucagggucGCCGgGGCg -3'
miRNA:   3'- -GCCGCCGa-------------GGuCG-GCCCC---------UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 24780 0.67 0.409183
Target:  5'- uGcGCGGCgacgacgaCGGcCCGGGGgcccuGCCGcCGGCg -3'
miRNA:   3'- gC-CGCCGag------GUC-GGCCCC-----UGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 43277 0.67 0.417236
Target:  5'- gCGGCcGUUCC-GCCcucggaGGcGGAgCCGCGGCu -3'
miRNA:   3'- -GCCGcCGAGGuCGG------CC-CCU-GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 142150 0.67 0.417236
Target:  5'- uGGCGGCgUCCcGUCGcGGGGugggguccgaCGUGGCg -3'
miRNA:   3'- gCCGCCG-AGGuCGGC-CCCUg---------GCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 121412 0.67 0.417236
Target:  5'- gGGCGcGUgcugcgCCuugGGCCcGGGGGCCugGUGGCa -3'
miRNA:   3'- gCCGC-CGa-----GG---UCGG-CCCCUGG--CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 93873 0.67 0.409183
Target:  5'- --cCGGCUugCCGGUCGGcGGGcCCGCGGg -3'
miRNA:   3'- gccGCCGA--GGUCGGCC-CCU-GGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 27008 0.67 0.392592
Target:  5'- gGGCucGGUUCCGgcGCCGGGuggcggaGGCCGaGGCg -3'
miRNA:   3'- gCCG--CCGAGGU--CGGCCC-------CUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 46468 0.67 0.385617
Target:  5'- uGGCGGCggUCCAGCuCuGGGACauguCGCGuccGCg -3'
miRNA:   3'- gCCGCCG--AGGUCG-GcCCCUG----GCGC---CG- -5'
5538 3' -66.7 NC_001806.1 + 12798 0.67 0.375687
Target:  5'- cCGGCgaucaGGC-CCauguuguucgggguGGCCGGGGGaugguaaggcgUCGCGGCg -3'
miRNA:   3'- -GCCG-----CCGaGG--------------UCGGCCCCU-----------GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 42740 0.67 0.400438
Target:  5'- uGGCGGCgauguggUCCGGUuguagCGGGGucCCGUGcGCc -3'
miRNA:   3'- gCCGCCG-------AGGUCG-----GCCCCu-GGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 23459 0.67 0.393372
Target:  5'- -cGCGGCgCC--CCGGGccGCCGCGGCg -3'
miRNA:   3'- gcCGCCGaGGucGGCCCc-UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 25532 0.67 0.393372
Target:  5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCc -3'
miRNA:   3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 71350 0.67 0.401228
Target:  5'- gGGCacGGC-CCAcGCCaGGcGGACCGCgagggGGCg -3'
miRNA:   3'- gCCG--CCGaGGU-CGG-CC-CCUGGCG-----CCG- -5'
5538 3' -66.7 NC_001806.1 + 2543 0.67 0.401228
Target:  5'- cCGcGCGGCgaucgaGGCCaGGGcCCGCGGg -3'
miRNA:   3'- -GC-CGCCGagg---UCGGcCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 148127 0.67 0.401228
Target:  5'- gGGgGGCUgcgugagacgcCCcGCCcgucacGGGGGgCGCGGCg -3'
miRNA:   3'- gCCgCCGA-----------GGuCGG------CCCCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 2662 0.67 0.417236
Target:  5'- gGGCGGC---GGCCGcGGGcGCCGCcguguGGCu -3'
miRNA:   3'- gCCGCCGaggUCGGC-CCC-UGGCG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.