miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 145644 0.68 0.327308
Target:  5'- uGGCGGgU---GCCgGGGGACCGgGGUg -3'
miRNA:   3'- gCCGCCgAgguCGG-CCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 144999 0.66 0.467496
Target:  5'- aGG-GGCcCCGGcCCGGGGccccacaacgGCC-CGGCg -3'
miRNA:   3'- gCCgCCGaGGUC-GGCCCC----------UGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 144967 0.81 0.045721
Target:  5'- uGGCGGC-CCGGCCcGGGGCCcCGGCg -3'
miRNA:   3'- gCCGCCGaGGUCGGcCCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 144799 0.69 0.306537
Target:  5'- aGGCcGCguaCGGcCCGGGacgaggggcccccGACCGCGGCg -3'
miRNA:   3'- gCCGcCGag-GUC-GGCCC-------------CUGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 144555 0.71 0.230963
Target:  5'- gGGUGGUgcgaaagacuuUCCGGgcgcguCCGGGuGCCGCGGCu -3'
miRNA:   3'- gCCGCCG-----------AGGUC------GGCCCcUGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 143387 0.71 0.220761
Target:  5'- aCGGCGacaacGCUCCccggcGGCCGGG--UCGCGGCu -3'
miRNA:   3'- -GCCGC-----CGAGG-----UCGGCCCcuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 143259 0.67 0.425385
Target:  5'- gGGgGGaugUgGGCgGGGGugCGCGGg -3'
miRNA:   3'- gCCgCCga-GgUCGgCCCCugGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 143119 0.69 0.307191
Target:  5'- gGGCguGGCUgCCGGgaGGGG-CCGCGGa -3'
miRNA:   3'- gCCG--CCGA-GGUCggCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 142150 0.67 0.417236
Target:  5'- uGGCGGCgUCCcGUCGcGGGGugggguccgaCGUGGCg -3'
miRNA:   3'- gCCGCCG-AGGuCGGC-CCCUg---------GCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 137674 0.66 0.441962
Target:  5'- gCGGuUGGCcCCGGCCacccacGGGGcGCUGcCGGCc -3'
miRNA:   3'- -GCC-GCCGaGGUCGG------CCCC-UGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 136995 0.71 0.24156
Target:  5'- uGGCGGCggCCGG-CGGGGAgCGCcaGCu -3'
miRNA:   3'- gCCGCCGa-GGUCgGCCCCUgGCGc-CG- -5'
5538 3' -66.7 NC_001806.1 + 136676 0.67 0.425385
Target:  5'- cCGGCGaa-CCAGCCguuGGGGcugcagACCGCGGg -3'
miRNA:   3'- -GCCGCcgaGGUCGG---CCCC------UGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 136371 0.71 0.230963
Target:  5'- cCGGCGcGCUCCgcGGCCuccGcGACCGUGGCc -3'
miRNA:   3'- -GCCGC-CGAGG--UCGGcc-C-CUGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 132989 0.67 0.393372
Target:  5'- uGGCcGCUCCcucagAGCCcuGGGCCGgGGCc -3'
miRNA:   3'- gCCGcCGAGG-----UCGGccCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 132905 0.69 0.320495
Target:  5'- uGGCGGCcCUGGCCgaccucggGGGGAgCG-GGCu -3'
miRNA:   3'- gCCGCCGaGGUCGG--------CCCCUgGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 132751 0.68 0.370412
Target:  5'- uCGGCGGCagccggaugccUCCuGCCcgcggugcGGGaGGCgGUGGCg -3'
miRNA:   3'- -GCCGCCG-----------AGGuCGG--------CCC-CUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 132638 0.7 0.25256
Target:  5'- uCGGCacGGgaCCugguGCgCGGGG-CCGCGGCc -3'
miRNA:   3'- -GCCG--CCgaGGu---CG-GCCCCuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 127752 0.68 0.362965
Target:  5'- gGGCgGGCUgCCGGgUGcGGGcCUGUGGCg -3'
miRNA:   3'- gCCG-CCGA-GGUCgGC-CCCuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 126572 0.67 0.401228
Target:  5'- aGGCGGUgcUCC-GCCGcGGAUCG-GGCc -3'
miRNA:   3'- gCCGCCG--AGGuCGGCcCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 126138 0.75 0.114244
Target:  5'- aCGGCGGCga-GGCCGGcgccGACaCGCGGCg -3'
miRNA:   3'- -GCCGCCGaggUCGGCCc---CUG-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.