Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5538 | 3' | -66.7 | NC_001806.1 | + | 151531 | 0.73 | 0.174963 |
Target: 5'- gGGaCGGCgCCcgugggcccgggcGGCCGGGGGCgGCGGg -3' miRNA: 3'- gCC-GCCGaGG-------------UCGGCCCCUGgCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 151430 | 0.81 | 0.048078 |
Target: 5'- gCGGgGGCccaCCGGCgGGGGGCgGCGGCg -3' miRNA: 3'- -GCCgCCGa--GGUCGgCCCCUGgCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 151323 | 0.73 | 0.159665 |
Target: 5'- uGGCgccGGCUCgGGCgGGGGGCUGUccGGCc -3' miRNA: 3'- gCCG---CCGAGgUCGgCCCCUGGCG--CCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 151275 | 0.78 | 0.069929 |
Target: 5'- gGGCGGUgggggCCggGGCCgGGGGGCgGCGGCg -3' miRNA: 3'- gCCGCCGa----GG--UCGG-CCCCUGgCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 150995 | 0.71 | 0.210945 |
Target: 5'- -cGCGGCgcgCCAGgCGGGcGGCCGaGGCc -3' miRNA: 3'- gcCGCCGa--GGUCgGCCC-CUGGCgCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 150868 | 0.71 | 0.225813 |
Target: 5'- gGGcCGGCUCCgcgGGCCaGGGcCCG-GGCa -3' miRNA: 3'- gCC-GCCGAGG---UCGGcCCCuGGCgCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 150651 | 0.67 | 0.425385 |
Target: 5'- uCGGCGGacgCUgguuGGCCGGGccccGCCGCgcuGGCg -3' miRNA: 3'- -GCCGCCga-GG----UCGGCCCc---UGGCG---CCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 150111 | 0.75 | 0.119904 |
Target: 5'- gGGCGGCcCCGuccCCGGGGACCaaccCGGCg -3' miRNA: 3'- gCCGCCGaGGUc--GGCCCCUGGc---GCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 149805 | 0.71 | 0.24156 |
Target: 5'- gGGCGGC-CCucaGGCCGGcGGGuacucgcuCCGgGGCg -3' miRNA: 3'- gCCGCCGaGG---UCGGCC-CCU--------GGCgCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 148191 | 0.73 | 0.175372 |
Target: 5'- gCGG-GGCgUCCGGCgGGGGGCgGgCGGUa -3' miRNA: 3'- -GCCgCCG-AGGUCGgCCCCUGgC-GCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 148127 | 0.67 | 0.401228 |
Target: 5'- gGGgGGCUgcgugagacgcCCcGCCcgucacGGGGGgCGCGGCg -3' miRNA: 3'- gCCgCCGA-----------GGuCGG------CCCCUgGCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 148075 | 0.66 | 0.475304 |
Target: 5'- cCGuGUGGC-CCGaugggcGCCGaGGGgggcgcuguccgaGCCGCGGCc -3' miRNA: 3'- -GC-CGCCGaGGU------CGGC-CCC-------------UGGCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 147800 | 0.66 | 0.450387 |
Target: 5'- gGGCGGagcCUGGCaUGGGcGCCGCGGg -3' miRNA: 3'- gCCGCCga-GGUCG-GCCCcUGGCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 147714 | 0.67 | 0.404398 |
Target: 5'- aGGCGGCgcUCgcacgcacggggccaCGGCCgcgcGGGGGCgCGCGGg -3' miRNA: 3'- gCCGCCG--AG---------------GUCGG----CCCCUG-GCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 147668 | 0.84 | 0.027579 |
Target: 5'- gCGGcCGGCUCCGccCCGGGGGCCGgGGCg -3' miRNA: 3'- -GCC-GCCGAGGUc-GGCCCCUGGCgCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 147495 | 0.73 | 0.159665 |
Target: 5'- gGGCGGCgCCGGagGGGGcggcGCCGCGGg -3' miRNA: 3'- gCCGCCGaGGUCggCCCC----UGGCGCCg -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 147225 | 0.7 | 0.247009 |
Target: 5'- aGGCGGCcCCcGCgGGGG-UCGgGGCc -3' miRNA: 3'- gCCGCCGaGGuCGgCCCCuGGCgCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 147107 | 0.66 | 0.476175 |
Target: 5'- -cGCGGC-CCAGaagcagcgCGGGGGCCGagggaGGUu -3' miRNA: 3'- gcCGCCGaGGUCg-------GCCCCUGGCg----CCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 146842 | 1.09 | 0.00038 |
Target: 5'- gCGGCGGCUCCAGCCGGGGACCGCGGCc -3' miRNA: 3'- -GCCGCCGAGGUCGGCCCCUGGCGCCG- -5' |
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5538 | 3' | -66.7 | NC_001806.1 | + | 146179 | 0.72 | 0.201507 |
Target: 5'- uCGGUGGUcaggCAGCCcGGG-CCGCGGCu -3' miRNA: 3'- -GCCGCCGag--GUCGGcCCCuGGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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