miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 89265 0.65 0.482298
Target:  5'- cCGGCuGGCUCCgcgagGGCCGGcGGGCgcaaaaaacccggaCGCcGCc -3'
miRNA:   3'- -GCCG-CCGAGG-----UCGGCC-CCUG--------------GCGcCG- -5'
5538 3' -66.7 NC_001806.1 + 5095 0.76 0.108835
Target:  5'- gCGGCGGC-CCgucgguggGGcCCGGGGAgCCGgGGCg -3'
miRNA:   3'- -GCCGCCGaGG--------UC-GGCCCCU-GGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 126138 0.75 0.114244
Target:  5'- aCGGCGGCga-GGCCGGcgccGACaCGCGGCg -3'
miRNA:   3'- -GCCGCCGaggUCGGCCc---CUG-GCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 150111 0.75 0.119904
Target:  5'- gGGCGGCcCCGuccCCGGGGACCaaccCGGCg -3'
miRNA:   3'- gCCGCCGaGGUc--GGCCCCUGGc---GCCG- -5'
5538 3' -66.7 NC_001806.1 + 57034 0.75 0.12283
Target:  5'- gGGUGGC-CgGGCCcGGGGCCGgGGCc -3'
miRNA:   3'- gCCGCCGaGgUCGGcCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 3095 0.75 0.128574
Target:  5'- gCGGCGGCggCCgcggagcucggcaGGCgCGGGucCCGCGGCa -3'
miRNA:   3'- -GCCGCCGa-GG-------------UCG-GCCCcuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 26254 0.74 0.138481
Target:  5'- uGGCGGCgggCAGCCcGGGccccCCGCGGCc -3'
miRNA:   3'- gCCGCCGag-GUCGGcCCCu---GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 92928 0.74 0.141823
Target:  5'- gGGCGGg-CCuggaGGCCGGGGcCCGCGcGCu -3'
miRNA:   3'- gCCGCCgaGG----UCGGCCCCuGGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 46093 0.74 0.141823
Target:  5'- gGGCGGUuuugUCCGGCCcGGGGCCugcGCGGg -3'
miRNA:   3'- gCCGCCG----AGGUCGGcCCCUGG---CGCCg -5'
5538 3' -66.7 NC_001806.1 + 27279 0.76 0.103667
Target:  5'- uCGGCGGCcgCCAGCgCGgcGGGGCC-CGGCc -3'
miRNA:   3'- -GCCGCCGa-GGUCG-GC--CCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 50080 0.76 0.103667
Target:  5'- aCGGCGuuGCgUCCcGUCGGGG-CCGCGGCc -3'
miRNA:   3'- -GCCGC--CG-AGGuCGGCCCCuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 4658 0.76 0.098731
Target:  5'- gCGGCGGC-UgGGCCGGcGGG-CGCGGCg -3'
miRNA:   3'- -GCCGCCGaGgUCGGCC-CCUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 147668 0.84 0.027579
Target:  5'- gCGGcCGGCUCCGccCCGGGGGCCGgGGCg -3'
miRNA:   3'- -GCC-GCCGAGGUc-GGCCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 4443 0.82 0.035531
Target:  5'- gGGCGGCgUCCGcCCGGGGGCUGcCGGCg -3'
miRNA:   3'- gCCGCCG-AGGUcGGCCCCUGGC-GCCG- -5'
5538 3' -66.7 NC_001806.1 + 144967 0.81 0.045721
Target:  5'- uGGCGGC-CCGGCCcGGGGCCcCGGCg -3'
miRNA:   3'- gCCGCCGaGGUCGGcCCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 151430 0.81 0.048078
Target:  5'- gCGGgGGCccaCCGGCgGGGGGCgGCGGCg -3'
miRNA:   3'- -GCCgCCGa--GGUCGgCCCCUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 96456 0.79 0.058305
Target:  5'- uCGGCGGCUCCGaguucccccggcacGCCuGGGG-UCGCGGCc -3'
miRNA:   3'- -GCCGCCGAGGU--------------CGG-CCCCuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 151275 0.78 0.069929
Target:  5'- gGGCGGUgggggCCggGGCCgGGGGGCgGCGGCg -3'
miRNA:   3'- gCCGCCGa----GG--UCGG-CCCCUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 29940 0.77 0.081123
Target:  5'- gGGCGGCUCCcgccagucgcgAGCCGcGGcGCCGCGGg -3'
miRNA:   3'- gCCGCCGAGG-----------UCGGC-CCcUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 22424 0.77 0.087344
Target:  5'- cCGGCcGCUUCGGCUGGGGccuggcGCaCGCGGCg -3'
miRNA:   3'- -GCCGcCGAGGUCGGCCCC------UG-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.