miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 5' -54.2 NC_001806.1 + 28237 0.66 0.962933
Target:  5'- gCGCCAUGUUgggggaccCCCGacccuuacaCUGGaaccggCCGCCa -3'
miRNA:   3'- aGCGGUACAAa-------GGGCa--------GACCa-----GGUGG- -5'
5538 5' -54.2 NC_001806.1 + 114246 0.68 0.917274
Target:  5'- aCGCCAUGUUUCacaaCGggcgCgUGGUaguggacgggcCCGCCa -3'
miRNA:   3'- aGCGGUACAAAGg---GCa---G-ACCA-----------GGUGG- -5'
5538 5' -54.2 NC_001806.1 + 68055 0.67 0.922911
Target:  5'- cCGCCcgG--UCUCGUCguUGGUCUACg -3'
miRNA:   3'- aGCGGuaCaaAGGGCAG--ACCAGGUGg -5'
5538 5' -54.2 NC_001806.1 + 34567 0.67 0.922911
Target:  5'- cCGCCGgggagcGUUgUCgCCGUC-GGUCUGCCg -3'
miRNA:   3'- aGCGGUa-----CAA-AG-GGCAGaCCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 90890 0.67 0.928308
Target:  5'- aCGCCGUGg--CCCGcgcGG-CCGCCc -3'
miRNA:   3'- aGCGGUACaaaGGGCagaCCaGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 62198 0.67 0.938378
Target:  5'- aUCGCCAgGUccgccgUCgCGcUCUGGUCCguaaggGCCg -3'
miRNA:   3'- -AGCGGUaCAa-----AGgGC-AGACCAGG------UGG- -5'
5538 5' -54.2 NC_001806.1 + 144758 0.67 0.943054
Target:  5'- gUCGCCGgaaUGUUUCguUCGUCU-GUCC-CCu -3'
miRNA:   3'- -AGCGGU---ACAAAG--GGCAGAcCAGGuGG- -5'
5538 5' -54.2 NC_001806.1 + 87442 0.67 0.943509
Target:  5'- aUCGCCccuggGUGUccggcagaauaaagCCCuUCUGGUCgGCCa -3'
miRNA:   3'- -AGCGG-----UACAaa------------GGGcAGACCAGgUGG- -5'
5538 5' -54.2 NC_001806.1 + 99913 0.66 0.946186
Target:  5'- gCGCCGUGauggUCUCG-UUGGUCCcgggagaauggcggGCCg -3'
miRNA:   3'- aGCGGUACaa--AGGGCaGACCAGG--------------UGG- -5'
5538 5' -54.2 NC_001806.1 + 37916 0.68 0.911996
Target:  5'- cUCGCCAUGggggcgccggggCCGUCc-GUCCACCc -3'
miRNA:   3'- -AGCGGUACaaag--------GGCAGacCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 51031 0.68 0.892346
Target:  5'- -gGuCCGUGUUgggCCCG-CgGGUCCGCg -3'
miRNA:   3'- agC-GGUACAAa--GGGCaGaCCAGGUGg -5'
5538 5' -54.2 NC_001806.1 + 19014 0.68 0.892346
Target:  5'- -gGCgCAUGUagCCCagGUCgggGGUCCAUCg -3'
miRNA:   3'- agCG-GUACAaaGGG--CAGa--CCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 84094 0.73 0.680278
Target:  5'- cUGCCGcGgaggCCCGUCgcgccacGGUCCGCCa -3'
miRNA:   3'- aGCGGUaCaaa-GGGCAGa------CCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 125732 0.72 0.730495
Target:  5'- -gGCCAUcggUCCCcUCUGGcCCGCCu -3'
miRNA:   3'- agCGGUAcaaAGGGcAGACCaGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 7807 0.72 0.740318
Target:  5'- -gGCCAUGUUgggccgCCaCGcgcggCUGGUCCACa -3'
miRNA:   3'- agCGGUACAAa-----GG-GCa----GACCAGGUGg -5'
5538 5' -54.2 NC_001806.1 + 83383 0.71 0.769179
Target:  5'- gCGCUGgaccggcCCUGUCUGGUCUGCCg -3'
miRNA:   3'- aGCGGUacaaa--GGGCAGACCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 22188 0.69 0.863752
Target:  5'- -gGCCGUGUgggcgCCCGagCUGGgcgaCGCCg -3'
miRNA:   3'- agCGGUACAaa---GGGCa-GACCag--GUGG- -5'
5538 5' -54.2 NC_001806.1 + 126661 0.69 0.869009
Target:  5'- aCGCCAcaccaucucccccgUG--UCCUGgagcuccggggaUCUGGUCCGCCg -3'
miRNA:   3'- aGCGGU--------------ACaaAGGGC------------AGACCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 2680 0.69 0.87123
Target:  5'- cCGCCGUGUggcugggcCCCGg--GGgcugCCGCCg -3'
miRNA:   3'- aGCGGUACAaa------GGGCagaCCa---GGUGG- -5'
5538 5' -54.2 NC_001806.1 + 85444 0.69 0.885532
Target:  5'- aCGUCAUcUUUCCCGgcacGUCCGCCc -3'
miRNA:   3'- aGCGGUAcAAAGGGCagacCAGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.