miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 3' -65.2 NC_001806.1 + 32943 0.66 0.491001
Target:  5'- -cCGGGCcguuguggGGcCCCGGGCCGgGGCc--- -3'
miRNA:   3'- caGUCCG--------UC-GGGCCCGGCgCCGagac -5'
5539 3' -65.2 NC_001806.1 + 25860 0.71 0.245651
Target:  5'- cUguGGCAGCCCGGGCCccccGCgGGCg--- -3'
miRNA:   3'- cAguCCGUCGGGCCCGG----CG-CCGagac -5'
5539 3' -65.2 NC_001806.1 + 59142 0.71 0.245651
Target:  5'- --aGGGCAG-CCGGGCCGgGGuCUCg- -3'
miRNA:   3'- cagUCCGUCgGGCCCGGCgCC-GAGac -5'
5539 3' -65.2 NC_001806.1 + 86661 0.71 0.251334
Target:  5'- cGUCAgcccGGCGGCCgUGaGGCCGCGGCa--- -3'
miRNA:   3'- -CAGU----CCGUCGG-GC-CCGGCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 28017 0.7 0.263025
Target:  5'- -cCAGGCAGaCUCGGGCCGCcccCUCUc -3'
miRNA:   3'- caGUCCGUC-GGGCCCGGCGcc-GAGAc -5'
5539 3' -65.2 NC_001806.1 + 2940 0.7 0.287726
Target:  5'- -cCGGGCGGCcgggCCGGGCCG-GGaCUCUu -3'
miRNA:   3'- caGUCCGUCG----GGCCCGGCgCC-GAGAc -5'
5539 3' -65.2 NC_001806.1 + 4427 0.69 0.29418
Target:  5'- --gGGGUGGCCCGGGCgGgGGCg--- -3'
miRNA:   3'- cagUCCGUCGGGCCCGgCgCCGagac -5'
5539 3' -65.2 NC_001806.1 + 5104 0.69 0.29418
Target:  5'- cGUCGGuGgGGCCCGGggaGCCGgGGCgCUGc -3'
miRNA:   3'- -CAGUC-CgUCGGGCC---CGGCgCCGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 136534 0.69 0.29418
Target:  5'- -aCGGGCcGCUCGGGCCGCccGGCg--- -3'
miRNA:   3'- caGUCCGuCGGGCCCGGCG--CCGagac -5'
5539 3' -65.2 NC_001806.1 + 89507 0.71 0.229239
Target:  5'- uGUCuGGCGGaUCCGGGCgGCGaGCUgCUGc -3'
miRNA:   3'- -CAGuCCGUC-GGGCCCGgCGC-CGA-GAC- -5'
5539 3' -65.2 NC_001806.1 + 64958 0.71 0.229239
Target:  5'- cGUC-GGC-GCCCGGGCCGgGGgUCc- -3'
miRNA:   3'- -CAGuCCGuCGGGCCCGGCgCCgAGac -5'
5539 3' -65.2 NC_001806.1 + 52458 0.71 0.223978
Target:  5'- --gGGGCcGCCCuGGCCGCGGaUCUGc -3'
miRNA:   3'- cagUCCGuCGGGcCCGGCGCCgAGAC- -5'
5539 3' -65.2 NC_001806.1 + 26259 0.79 0.066955
Target:  5'- -gCGGGCAGCCCGGGCCccccGCGGC-Cg- -3'
miRNA:   3'- caGUCCGUCGGGCCCGG----CGCCGaGac -5'
5539 3' -65.2 NC_001806.1 + 144574 0.76 0.100442
Target:  5'- -cCGGGCGcGUCCGGguGCCGCGGCUCUc -3'
miRNA:   3'- caGUCCGU-CGGGCC--CGGCGCCGAGAc -5'
5539 3' -65.2 NC_001806.1 + 143404 0.75 0.116686
Target:  5'- ---cGGCGG-CCGGGUCGCGGCUCUu -3'
miRNA:   3'- caguCCGUCgGGCCCGGCGCCGAGAc -5'
5539 3' -65.2 NC_001806.1 + 29835 0.74 0.138719
Target:  5'- cUCAcGCAGCCCcccagccGGCCGCGGCUCg- -3'
miRNA:   3'- cAGUcCGUCGGGc------CCGGCGCCGAGac -5'
5539 3' -65.2 NC_001806.1 + 72371 0.72 0.197318
Target:  5'- cGUCGGGCccggaacccgcGGCUCcugcggacuugacGGCCGCGGCUCUGc -3'
miRNA:   3'- -CAGUCCG-----------UCGGGc------------CCGGCGCCGAGAC- -5'
5539 3' -65.2 NC_001806.1 + 77963 0.72 0.199194
Target:  5'- ---cGGCGGCCCcgGGGCCGCcGCUCg- -3'
miRNA:   3'- caguCCGUCGGG--CCCGGCGcCGAGac -5'
5539 3' -65.2 NC_001806.1 + 2788 0.72 0.208808
Target:  5'- ---cGGCGGCCCGGggcGCCGCGGg-CUGg -3'
miRNA:   3'- caguCCGUCGGGCC---CGGCGCCgaGAC- -5'
5539 3' -65.2 NC_001806.1 + 5597 0.71 0.21882
Target:  5'- -cCGGG-GGCCCGuGGCCGCGGCccgUUGg -3'
miRNA:   3'- caGUCCgUCGGGC-CCGGCGCCGa--GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.