miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 3' -65.2 NC_001806.1 + 384 0.67 0.43793
Target:  5'- -gCGGGgGGCCCGGGCUGCcacaGGUg--- -3'
miRNA:   3'- caGUCCgUCGGGCCCGGCG----CCGagac -5'
5539 3' -65.2 NC_001806.1 + 2788 0.72 0.208808
Target:  5'- ---cGGCGGCCCGGggcGCCGCGGg-CUGg -3'
miRNA:   3'- caguCCGUCGGGCC---CGGCGCCgaGAC- -5'
5539 3' -65.2 NC_001806.1 + 2940 0.7 0.287726
Target:  5'- -cCGGGCGGCcgggCCGGGCCG-GGaCUCUu -3'
miRNA:   3'- caGUCCGUCG----GGCCCGGCgCC-GAGAc -5'
5539 3' -65.2 NC_001806.1 + 3608 0.66 0.46407
Target:  5'- -gCGGGCAccgcgcgcucGCCCGGuGCgGCGGCg--- -3'
miRNA:   3'- caGUCCGU----------CGGGCC-CGgCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 4190 0.69 0.314217
Target:  5'- --gGGGCccGGCgCCGGGCCaCGGCUCc- -3'
miRNA:   3'- cagUCCG--UCG-GGCCCGGcGCCGAGac -5'
5539 3' -65.2 NC_001806.1 + 4427 0.69 0.29418
Target:  5'- --gGGGUGGCCCGGGCgGgGGCg--- -3'
miRNA:   3'- cagUCCGUCGGGCCCGgCgCCGagac -5'
5539 3' -65.2 NC_001806.1 + 4743 0.68 0.349866
Target:  5'- -cCGGGCcggGGCCCGGucGCCGgCGGCgucggCUGc -3'
miRNA:   3'- caGUCCG---UCGGGCC--CGGC-GCCGa----GAC- -5'
5539 3' -65.2 NC_001806.1 + 5104 0.69 0.29418
Target:  5'- cGUCGGuGgGGCCCGGggaGCCGgGGCgCUGc -3'
miRNA:   3'- -CAGUC-CgUCGGGCC---CGGCgCCGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 5597 0.71 0.21882
Target:  5'- -cCGGG-GGCCCGuGGCCGCGGCccgUUGg -3'
miRNA:   3'- caGUCCgUCGGGC-CCGGCGCCGa--GAC- -5'
5539 3' -65.2 NC_001806.1 + 5773 0.66 0.491001
Target:  5'- --gGGGCggGGCCCGGGCCccgacuuccCGGUUCg- -3'
miRNA:   3'- cagUCCG--UCGGGCCCGGc--------GCCGAGac -5'
5539 3' -65.2 NC_001806.1 + 5893 0.67 0.396314
Target:  5'- -gCGGGCGGCCCaaGGGCCGCccGCcUUGc -3'
miRNA:   3'- caGUCCGUCGGG--CCCGGCGc-CGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 6080 0.69 0.335268
Target:  5'- --gGGGCgGGCCCGGGCgGCGGggggcggguCUCUc -3'
miRNA:   3'- cagUCCG-UCGGGCCCGgCGCC---------GAGAc -5'
5539 3' -65.2 NC_001806.1 + 12819 0.66 0.454389
Target:  5'- uUCGGGguGgCCGGGggaugguaaggcgUCGCGGCgucCUGg -3'
miRNA:   3'- cAGUCCguCgGGCCC-------------GGCGCCGa--GAC- -5'
5539 3' -65.2 NC_001806.1 + 20350 0.66 0.446551
Target:  5'- -gCGGGCGGCCCuuGGGCCGCccGC-Cg- -3'
miRNA:   3'- caGUCCGUCGGG--CCCGGCGc-CGaGac -5'
5539 3' -65.2 NC_001806.1 + 24001 0.66 0.446551
Target:  5'- -gCuGGCGGCCCuGGCCaacCGGCUgUGc -3'
miRNA:   3'- caGuCCGUCGGGcCCGGc--GCCGAgAC- -5'
5539 3' -65.2 NC_001806.1 + 24329 0.68 0.357332
Target:  5'- -aCGGuGCuGGCCuCGGGCCGCGuGUUCg- -3'
miRNA:   3'- caGUC-CG-UCGG-GCCCGGCGC-CGAGac -5'
5539 3' -65.2 NC_001806.1 + 25860 0.71 0.245651
Target:  5'- cUguGGCAGCCCGGGCCccccGCgGGCg--- -3'
miRNA:   3'- cAguCCGUCGGGCCCGG----CG-CCGagac -5'
5539 3' -65.2 NC_001806.1 + 25911 0.67 0.43793
Target:  5'- ---cGGCGGUCCGGGCgGCGuGCg--- -3'
miRNA:   3'- caguCCGUCGGGCCCGgCGC-CGagac -5'
5539 3' -65.2 NC_001806.1 + 26259 0.79 0.066955
Target:  5'- -gCGGGCAGCCCGGGCCccccGCGGC-Cg- -3'
miRNA:   3'- caGUCCGUCGGGCCCGG----CGCCGaGac -5'
5539 3' -65.2 NC_001806.1 + 26955 0.67 0.43793
Target:  5'- cUC-GGCcGCCCGccuggcgcGCCGCGGCUCg- -3'
miRNA:   3'- cAGuCCGuCGGGCc-------CGGCGCCGAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.