miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 3' -65.2 NC_001806.1 + 150879 0.66 0.455265
Target:  5'- -gCGGGCcagGGCCCGGGCaCG-GGcCUCg- -3'
miRNA:   3'- caGUCCG---UCGGGCCCG-GCgCC-GAGac -5'
5539 3' -65.2 NC_001806.1 + 148100 0.67 0.43793
Target:  5'- --gGGGCGcuGUCCGaGCCGCGGCcggCUGg -3'
miRNA:   3'- cagUCCGU--CGGGCcCGGCGCCGa--GAC- -5'
5539 3' -65.2 NC_001806.1 + 147984 0.66 0.455265
Target:  5'- --gGGGCcagacGCCCcccgcGGcGCCGCGGCUCg- -3'
miRNA:   3'- cagUCCGu----CGGG-----CC-CGGCGCCGAGac -5'
5539 3' -65.2 NC_001806.1 + 146184 1.06 0.000606
Target:  5'- gGUCAGGCAGCCCGGGCCGCGGCUCUGu -3'
miRNA:   3'- -CAGUCCGUCGGGCCCGGCGCCGAGAC- -5'
5539 3' -65.2 NC_001806.1 + 144574 0.76 0.100442
Target:  5'- -cCGGGCGcGUCCGGguGCCGCGGCUCUc -3'
miRNA:   3'- caGUCCGU-CGGGCC--CGGCGCCGAGAc -5'
5539 3' -65.2 NC_001806.1 + 143404 0.75 0.116686
Target:  5'- ---cGGCGG-CCGGGUCGCGGCUCUu -3'
miRNA:   3'- caguCCGUCgGGCCCGGCGCCGAGAc -5'
5539 3' -65.2 NC_001806.1 + 136534 0.69 0.29418
Target:  5'- -aCGGGCcGCUCGGGCCGCccGGCg--- -3'
miRNA:   3'- caGUCCGuCGGGCCCGGCG--CCGagac -5'
5539 3' -65.2 NC_001806.1 + 131965 0.69 0.333118
Target:  5'- cGUCcuGGCGGCCCuggagcgccagaccGGGCCGgUGGCcCUGu -3'
miRNA:   3'- -CAGu-CCGUCGGG--------------CCCGGC-GCCGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 115114 0.69 0.314217
Target:  5'- uUCGGGUGcGCCCaGGuGCCGCGGCg--- -3'
miRNA:   3'- cAGUCCGU-CGGG-CC-CGGCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 108152 0.66 0.46407
Target:  5'- -aCAcGCAGCCCGuGGCCGCaauugcgcccgGGuUUCUGg -3'
miRNA:   3'- caGUcCGUCGGGC-CCGGCG-----------CC-GAGAC- -5'
5539 3' -65.2 NC_001806.1 + 107028 0.67 0.43793
Target:  5'- -cCGGGUuggccGCCCgcgGGGCCGCgGGCUgUGc -3'
miRNA:   3'- caGUCCGu----CGGG---CCCGGCG-CCGAgAC- -5'
5539 3' -65.2 NC_001806.1 + 94195 0.66 0.472963
Target:  5'- -cCGGGCcuggaGGCCCaGGCCGgGGC-CUu -3'
miRNA:   3'- caGUCCG-----UCGGGcCCGGCgCCGaGAc -5'
5539 3' -65.2 NC_001806.1 + 89507 0.71 0.229239
Target:  5'- uGUCuGGCGGaUCCGGGCgGCGaGCUgCUGc -3'
miRNA:   3'- -CAGuCCGUC-GGGCCCGgCGC-CGA-GAC- -5'
5539 3' -65.2 NC_001806.1 + 86661 0.71 0.251334
Target:  5'- cGUCAgcccGGCGGCCgUGaGGCCGCGGCa--- -3'
miRNA:   3'- -CAGU----CCGUCGG-GC-CCGGCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 77963 0.72 0.199194
Target:  5'- ---cGGCGGCCCcgGGGCCGCcGCUCg- -3'
miRNA:   3'- caguCCGUCGGG--CCCGGCGcCGAGac -5'
5539 3' -65.2 NC_001806.1 + 76589 0.67 0.412655
Target:  5'- -cCGGGCccAGCUCGaGGCCGaGGgUCUGg -3'
miRNA:   3'- caGUCCG--UCGGGC-CCGGCgCCgAGAC- -5'
5539 3' -65.2 NC_001806.1 + 75983 0.68 0.349866
Target:  5'- --gAGcGCGGCCUucgGGGCCGCGGC-Cg- -3'
miRNA:   3'- cagUC-CGUCGGG---CCCGGCGCCGaGac -5'
5539 3' -65.2 NC_001806.1 + 72692 0.67 0.388301
Target:  5'- aUCGGGC-GCCCgacgauguauGGGCgGUGGCcCUGa -3'
miRNA:   3'- cAGUCCGuCGGG----------CCCGgCGCCGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 72371 0.72 0.197318
Target:  5'- cGUCGGGCccggaacccgcGGCUCcugcggacuugacGGCCGCGGCUCUGc -3'
miRNA:   3'- -CAGUCCG-----------UCGGGc------------CCGGCGCCGAGAC- -5'
5539 3' -65.2 NC_001806.1 + 69860 0.67 0.390693
Target:  5'- cUCGGGCAGCCCagccacgcccccucuGuccaccuGGCCGCGGCg--- -3'
miRNA:   3'- cAGUCCGUCGGG---------------C-------CCGGCGCCGagac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.