miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 3' -65.2 NC_001806.1 + 64958 0.71 0.229239
Target:  5'- cGUC-GGC-GCCCGGGCCGgGGgUCc- -3'
miRNA:   3'- -CAGuCCGuCGGGCCCGGCgCCgAGac -5'
5539 3' -65.2 NC_001806.1 + 59142 0.71 0.245651
Target:  5'- --aGGGCAG-CCGGGCCGgGGuCUCg- -3'
miRNA:   3'- cagUCCGUCgGGCCCGGCgCC-GAGac -5'
5539 3' -65.2 NC_001806.1 + 57025 0.68 0.380395
Target:  5'- -cCAGGCacuggguggccgGGCCCgGGGCCGgGGCccccggCUGc -3'
miRNA:   3'- caGUCCG------------UCGGG-CCCGGCgCCGa-----GAC- -5'
5539 3' -65.2 NC_001806.1 + 56520 0.68 0.349866
Target:  5'- ---cGGCAgGCCCGGGCC-CGGCg--- -3'
miRNA:   3'- caguCCGU-CGGGCCCGGcGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 52458 0.71 0.223978
Target:  5'- --gGGGCcGCCCuGGCCGCGGaUCUGc -3'
miRNA:   3'- cagUCCGuCGGGcCCGGCGCCgAGAC- -5'
5539 3' -65.2 NC_001806.1 + 49356 0.66 0.481941
Target:  5'- cGUCccGGCAGCgccCCGGGCCcgauGCGGCcCg- -3'
miRNA:   3'- -CAGu-CCGUCG---GGCCCGG----CGCCGaGac -5'
5539 3' -65.2 NC_001806.1 + 38274 0.67 0.43793
Target:  5'- -aCGGGCGGaccgCCGGGCgaGCGGCgUCg- -3'
miRNA:   3'- caGUCCGUCg---GGCCCGg-CGCCG-AGac -5'
5539 3' -65.2 NC_001806.1 + 33364 0.69 0.300746
Target:  5'- --aGGGgGGCCCGGagaGCCGCGGCa--- -3'
miRNA:   3'- cagUCCgUCGGGCC---CGGCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 32943 0.66 0.491001
Target:  5'- -cCGGGCcguuguggGGcCCCGGGCCGgGGCc--- -3'
miRNA:   3'- caGUCCG--------UC-GGGCCCGGCgCCGagac -5'
5539 3' -65.2 NC_001806.1 + 31727 0.66 0.455265
Target:  5'- aGUgGGGguGCCauguuGGGCa--GGCUCUGg -3'
miRNA:   3'- -CAgUCCguCGGg----CCCGgcgCCGAGAC- -5'
5539 3' -65.2 NC_001806.1 + 29835 0.74 0.138719
Target:  5'- cUCAcGCAGCCCcccagccGGCCGCGGCUCg- -3'
miRNA:   3'- cAGUcCGUCGGGc------CCGGCGCCGAGac -5'
5539 3' -65.2 NC_001806.1 + 28017 0.7 0.263025
Target:  5'- -cCAGGCAGaCUCGGGCCGCcccCUCUc -3'
miRNA:   3'- caGUCCGUC-GGGCCCGGCGcc-GAGAc -5'
5539 3' -65.2 NC_001806.1 + 27134 0.67 0.396314
Target:  5'- --gAGGCGGCCUGGGucuuCCGCGgaGCUCc- -3'
miRNA:   3'- cagUCCGUCGGGCCC----GGCGC--CGAGac -5'
5539 3' -65.2 NC_001806.1 + 26955 0.67 0.43793
Target:  5'- cUC-GGCcGCCCGccuggcgcGCCGCGGCUCg- -3'
miRNA:   3'- cAGuCCGuCGGGCc-------CGGCGCCGAGac -5'
5539 3' -65.2 NC_001806.1 + 26259 0.79 0.066955
Target:  5'- -gCGGGCAGCCCGGGCCccccGCGGC-Cg- -3'
miRNA:   3'- caGUCCGUCGGGCCCGG----CGCCGaGac -5'
5539 3' -65.2 NC_001806.1 + 25911 0.67 0.43793
Target:  5'- ---cGGCGGUCCGGGCgGCGuGCg--- -3'
miRNA:   3'- caguCCGUCGGGCCCGgCGC-CGagac -5'
5539 3' -65.2 NC_001806.1 + 25860 0.71 0.245651
Target:  5'- cUguGGCAGCCCGGGCCccccGCgGGCg--- -3'
miRNA:   3'- cAguCCGUCGGGCCCGG----CG-CCGagac -5'
5539 3' -65.2 NC_001806.1 + 24329 0.68 0.357332
Target:  5'- -aCGGuGCuGGCCuCGGGCCGCGuGUUCg- -3'
miRNA:   3'- caGUC-CG-UCGG-GCCCGGCGC-CGAGac -5'
5539 3' -65.2 NC_001806.1 + 24001 0.66 0.446551
Target:  5'- -gCuGGCGGCCCuGGCCaacCGGCUgUGc -3'
miRNA:   3'- caGuCCGUCGGGcCCGGc--GCCGAgAC- -5'
5539 3' -65.2 NC_001806.1 + 20350 0.66 0.446551
Target:  5'- -gCGGGCGGCCCuuGGGCCGCccGC-Cg- -3'
miRNA:   3'- caGUCCGUCGGG--CCCGGCGc-CGaGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.