miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 75567 0.69 0.63168
Target:  5'- gGCCGGGGaCCacuccCCCAGCggGcGCGCCCu -3'
miRNA:   3'- -UGGUCUC-GGac---GGGUUGuaC-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 32964 0.69 0.63168
Target:  5'- gGCCGGGGCCccuuggGUCCGcCggGGC-CCCg -3'
miRNA:   3'- -UGGUCUCGGa-----CGGGUuGuaCCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 3460 0.69 0.63168
Target:  5'- gGCCAcgcGGCCgGCCUgGGCGcGGCGCCCg -3'
miRNA:   3'- -UGGUc--UCGGaCGGG-UUGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 31765 0.69 0.63168
Target:  5'- -aCAGAGCCgcgGCCCg----GGCugCCu -3'
miRNA:   3'- ugGUCUCGGa--CGGGuuguaCCGugGG- -5'
5539 5' -58.2 NC_001806.1 + 22159 0.69 0.63168
Target:  5'- cGCCGGuucgaGGCCUcgggcGcCCCGGCGgccgugugGGCGCCCg -3'
miRNA:   3'- -UGGUC-----UCGGA-----C-GGGUUGUa-------CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 151002 0.69 0.630661
Target:  5'- cGCCAGgcgggcGGCCgagGCCCAgaccaccAgGUGGCgcACCCg -3'
miRNA:   3'- -UGGUC------UCGGa--CGGGU-------UgUACCG--UGGG- -5'
5539 5' -58.2 NC_001806.1 + 81361 0.69 0.621496
Target:  5'- gGCCGGGGCgUcGCCCGcgaACAUaGGCugCg -3'
miRNA:   3'- -UGGUCUCGgA-CGGGU---UGUA-CCGugGg -5'
5539 5' -58.2 NC_001806.1 + 26682 0.69 0.621496
Target:  5'- gGCCccGGCCcccaccGCCCGGCGUGG-GCCCg -3'
miRNA:   3'- -UGGucUCGGa-----CGGGUUGUACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 139756 0.69 0.611319
Target:  5'- gACCAGcGCaCUGCCCGACGccGCGCa- -3'
miRNA:   3'- -UGGUCuCG-GACGGGUUGUacCGUGgg -5'
5539 5' -58.2 NC_001806.1 + 23564 0.69 0.611319
Target:  5'- cCCGGGGCCcaGCCacACGgcGGCGCCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGguUGUa-CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 79741 0.69 0.611319
Target:  5'- cCCAGGguuggcggccGCCUGCCCuccccGACAcGGuCGCCCc -3'
miRNA:   3'- uGGUCU----------CGGACGGG-----UUGUaCC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 119271 0.69 0.611319
Target:  5'- aGCCcuuGGCCcgGCCCcACGcgggGGCGCCCg -3'
miRNA:   3'- -UGGuc-UCGGa-CGGGuUGUa---CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23295 0.69 0.611319
Target:  5'- cGCaAGAGUCccgGCCCGGCccGGCcGCCCg -3'
miRNA:   3'- -UGgUCUCGGa--CGGGUUGuaCCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 125843 0.69 0.610302
Target:  5'- cGCCGcGGGCC--CCCGGCcgccgcggacgccGUGGCGCCCc -3'
miRNA:   3'- -UGGU-CUCGGacGGGUUG-------------UACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 101851 0.69 0.601158
Target:  5'- cACCAGcGCC-GCCUGGCG-GGCcCCCg -3'
miRNA:   3'- -UGGUCuCGGaCGGGUUGUaCCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 57045 0.69 0.601158
Target:  5'- cCCGGGGCCgggGCCCccggcugcguGCcgGGCucCCCg -3'
miRNA:   3'- uGGUCUCGGa--CGGGu---------UGuaCCGu-GGG- -5'
5539 5' -58.2 NC_001806.1 + 146853 0.7 0.59102
Target:  5'- aGCCGGGGaCCgcgGCCCGcaGCcgGGuCGCCa -3'
miRNA:   3'- -UGGUCUC-GGa--CGGGU--UGuaCC-GUGGg -5'
5539 5' -58.2 NC_001806.1 + 47259 0.7 0.580912
Target:  5'- cGCCuGAGCCagGCCCAGCucAUGcccucccCACCCa -3'
miRNA:   3'- -UGGuCUCGGa-CGGGUUG--UACc------GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 46109 0.7 0.57084
Target:  5'- cCCGGGGCCUGCgCg----GGCGCCUc -3'
miRNA:   3'- uGGUCUCGGACGgGuuguaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 80301 0.7 0.560811
Target:  5'- aGCCGGuGGCCacGCCCAccACAucUGcGCGCCCc -3'
miRNA:   3'- -UGGUC-UCGGa-CGGGU--UGU--AC-CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.