miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 106363 0.68 0.692509
Target:  5'- cGCCGGuugggGCCCGGC--GGCACCCg -3'
miRNA:   3'- -UGGUCucggaCGGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 22773 0.68 0.682445
Target:  5'- cGCCGGGcGCCgcGCCCAggccggccGCGUGGCcgucgaguGCCUg -3'
miRNA:   3'- -UGGUCU-CGGa-CGGGU--------UGUACCG--------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 35536 0.68 0.682445
Target:  5'- cGCCA-AGCC-GCCCAGCGagccgcucgGcGCGCCCg -3'
miRNA:   3'- -UGGUcUCGGaCGGGUUGUa--------C-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 12436 0.68 0.682445
Target:  5'- cACCAGGcCCUGCaacgggCGGCAcGGCAUCCc -3'
miRNA:   3'- -UGGUCUcGGACGg-----GUUGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149676 0.68 0.682445
Target:  5'- gUgGGGGUCc-CCCAACAUGGCGgCCg -3'
miRNA:   3'- uGgUCUCGGacGGGUUGUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 24536 0.68 0.682445
Target:  5'- gGCCGGgcggcGGCCUcgggGaccaCCGACGccaUGGCGCCCg -3'
miRNA:   3'- -UGGUC-----UCGGA----Cg---GGUUGU---ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 132357 0.68 0.67234
Target:  5'- ---uGGGCCUGCggCCAcGCG-GGCACCCg -3'
miRNA:   3'- ugguCUCGGACG--GGU-UGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 61439 0.68 0.67234
Target:  5'- cGCCAGcGCCgccggGCUCAggAUAUGGCugUCc -3'
miRNA:   3'- -UGGUCuCGGa----CGGGU--UGUACCGugGG- -5'
5539 5' -58.2 NC_001806.1 + 45931 0.68 0.67234
Target:  5'- cGCCuGAcaCCU-CCCGcCGUGGCGCCCu -3'
miRNA:   3'- -UGGuCUc-GGAcGGGUuGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 77151 0.68 0.67234
Target:  5'- aGCUcggGGGGCgCgugGCCCAACAcgccgaccUGaGCGCCCg -3'
miRNA:   3'- -UGG---UCUCG-Ga--CGGGUUGU--------AC-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 143541 0.68 0.671328
Target:  5'- cCCGGcccGGCCcgGCCCGGCccGGCcaccgccGCCCa -3'
miRNA:   3'- uGGUC---UCGGa-CGGGUUGuaCCG-------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 128034 0.68 0.662203
Target:  5'- gGCCAG-GCCgacgaUGCCCGugGcGGCcacgGCCCc -3'
miRNA:   3'- -UGGUCuCGG-----ACGGGUugUaCCG----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 74849 0.68 0.662203
Target:  5'- gGCUAaaGGCCUGUCCGGCcguccUGGCgACCCu -3'
miRNA:   3'- -UGGUc-UCGGACGGGUUGu----ACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 149560 0.69 0.652041
Target:  5'- gUCAGGGgguuCCgcacccCCUAACAUGGCGCCCc -3'
miRNA:   3'- uGGUCUC----GGac----GGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 31245 0.69 0.652041
Target:  5'- gACCAGGGCa--CCCuagugGGCGCCCu -3'
miRNA:   3'- -UGGUCUCGgacGGGuuguaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 22321 0.69 0.652041
Target:  5'- gACCAG-GCCUGCuuCCGGaucUcgGGCGCCg -3'
miRNA:   3'- -UGGUCuCGGACG--GGUU---GuaCCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 96513 0.69 0.641865
Target:  5'- aACgGGGGcCCUGCcacuCCGGCGccgcccgccccUGGCGCCCc -3'
miRNA:   3'- -UGgUCUC-GGACG----GGUUGU-----------ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149748 0.69 0.641865
Target:  5'- --uGGcGCCc-CCCAAUAUGGCGCCCc -3'
miRNA:   3'- uggUCuCGGacGGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 78242 0.69 0.638809
Target:  5'- cCCGGGGCCucaUGUUCGGCAcgcggcuggcagacUGGCGCCg -3'
miRNA:   3'- uGGUCUCGG---ACGGGUUGU--------------ACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 75567 0.69 0.63168
Target:  5'- gGCCGGGGaCCacuccCCCAGCggGcGCGCCCu -3'
miRNA:   3'- -UGGUCUC-GGac---GGGUUGuaC-CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.